Welcome to the SHRINE Deployment Wiki
This wiki is a guide for those who want to install and administer the Shared Health Research Information Network (SHRINE) platform at their institution.
Wiki Work in Progress
As of May 2014, we are in the process of overhauling our wiki. The left navigation is an outline of what you can expect to find here. Please check back throughout the spring and early summer for updates.
Temporary Left Nav Stand-in
- SHRINE Basics
- Documentation
- Release Notes
- SHRINE-i2b2 Compatibility Matrix
- Upgrade
- Upgrading SHRINE to 3.2.1 (from version 3.1.0)
- SHRINE 3.2.1 Upgrade Chapter 1 - Stop Tomcat
- SHRINE 3.2.1 Upgrade Chapter 2 - Back Up SHRINE 3.1.0
- SHRINE 3.2.1 Upgrade Chapter 3 - Replace .war Files and Clean Out tomcat/webapps
- SHRINE 3.2.1 Upgrade Chapter 4 - Database Changes
- SHRINE 3.2.1 Upgrade Chapter 5 - Configuration Changes
- SHRINE 3.2.1 Upgrade Chapter 6 - Update Database Connections
- SHRINE 3.2.1 Upgrade Chapter 7 - Start Tomcat
- SHRINE 3.2.1 Upgrade Chapter 8 - Try the New Features
- Upgrading SHRINE to 3.1.0 (from version 3.0.0)
- SHRINE 3.1.0 Upgrade Chapter 1 - Stop Tomcat
- SHRINE 3.1.0 Upgrade Chapter 2 - Back Up SHRINE 3.0.0
- SHRINE 3.1.0 Upgrade Chapter 3 - Replace .war Files and Clean Out tomcat/webapps
- SHRINE 3.1.0 Upgrade Chapter 4 - Database Changes
- SHRINE 3.1.0 Upgrade Chapter 5 - Update SHRINE Lucene Index Files
- SHRINE 3.1.0 Upgrade Chapter 6 - Configuration Changes
- SHRINE 3.1.0 Upgrade Chapter 7 - Start Tomcat
- SHRINE 3.1.0 Upgrade Chapter 9 - Try the New Features
- Archived Upgrade Instructions
- Network Specific Instructions
- Patching SHRINE 1.22.6 to 1.22.8
- Upgrading SHRINE to 1.18.x
- Upgrading SHRINE to 1.19.x
- Upgrading SHRINE to 1.20
- Upgrading SHRINE to 1.22.8 (from 1.20-1.21)
- Upgrading SHRINE to 1.25.4 (from version 1.22.8)
- Upgrading SHRINE to 2.0.0 (from version 1.25.4)
- Upgrading SHRINE to 2.0.0 (from version 2.0.0-PR1 and later)
- Upgrading SHRINE to 2.0.0-PR1 (from version 1.25.4)
- Upgrading SHRINE to 3.0.0 (from version 2.0.0)
- SHRINE 3.0.0 Upgrade Chapter 1 - Stop Tomcat
- SHRINE 3.0.0 Upgrade Chapter 2 - Back Up SHRINE 2.0.0
- SHRINE 3.0.0 Upgrade Chapter 3 - Install JDK 11
- SHRINE 3.0.0 Upgrade Chapter 4 - Replace .war Files and Clean Out tomcat/webapps
- SHRINE 3.0.0 Upgrade Chapter 5 - Database Changes
- SHRINE 3.0.0 Upgrade Chapter 6 - Install SHRINE Lucene Index Files
- SHRINE 3.0.0 Upgrade Chapter 7 - Configuration Changes
- SHRINE 3.0.0 Upgrade Chapter 8 - Start Tomcat
- SHRINE 3.0.0 Upgrade Chapter 9 - Try the New Features
- Upgrading SHRINE to 3.2.0 (from version 3.1.0)
- SHRINE 3.2.0 Upgrade Chapter 1 - Stop Tomcat
- SHRINE 3.2.0 Upgrade Chapter 2 - Back Up SHRINE 3.1.0
- SHRINE 3.2.0 Upgrade Chapter 3 - Replace .war Files and Clean Out tomcat/webapps
- SHRINE 3.2.0 Upgrade Chapter 4 - Database Changes
- SHRINE 3.2.0 Upgrade Chapter 5 - Configuration Changes
- SHRINE 3.2.0 Upgrade Chapter 6 - Update Database Connections
- SHRINE 3.2.0 Upgrade Chapter 7 - Start Tomcat
- SHRINE 3.2.0 Upgrade Chapter 8 - Try the New Features
- Update SHRINE Lucene Index Files - For ACT Ontology Version 4.0.0
- Upgrading SHRINE to 3.2.1 (from version 3.1.0)
- Installation
- SHRINE 3.2.1 Installation Guide
- SHRINE 3.2.1 Chapter 1 - Introduction
- SHRINE 3.2.1 Chapter 2 - Requirements
- SHRINE 3.2.1 Chapter 3 - Install | Configure the OS
- SHRINE 3.2.1 Chapter 4 - Set up Java JDK 11
- SHRINE 3.2.1 Chapter 5 - Set up Apache Tomcat
- SHRINE 3.2.1 Chapter 6 - Install | Configure a Database Service
- SHRINE 3.2.1 Chapter 7 - Install SHRINE Software
- SHRINE 3.2.1 Chapter 8 - SHRINE's Configuration File
- SHRINE 3.2.1 Chapter 9 - Configuring the SHRINE Data Steward
- SHRINE 3.2.1 Chapter 10 - Setting Up the SHRINE Demo Ontology for SHRINE
- SHRINE 3.2.1 Chapter 11 - Integration With i2b2 Software
- SHRINE 3.2.1 Chapter 12 - Setting Up the SHRINE Keystore
- SHRINE 3.2.1 Chapter 12.1 - Creating a Certificate Signing Request (CSR)
- SHRINE 3.2.1 Chapter 12.2 - Importing Certificates
- SHRINE 3.2.1 Chapter 12.3 - Configuring Certificates
- SHRINE 3.2.1 Chapter 12.4 - Sample server.xml File
- SHRINE 3.2.1 Chapter 12.5 - Using Third-Party-Signed Certificate for Browser Encryption
- SHRINE 3.2.1 Chapter 13 - Connecting to a SHRINE Network
- SHRINE 3.2.1 Chapter 14 - Verifying SHRINE Operation
- SHRINE 3.2.1 SHRINE Install Checklist
- SHRINE 3.1.0 Installation Guide
- SHRINE 3.1.0 Chapter 1 - Introduction
- SHRINE 3.1.0 Chapter 2 - Requirements
- SHRINE 3.1.0 Chapter 3 - Install | Configure the OS
- SHRINE 3.1.0 Chapter 4 - Set up Java JDK 11
- SHRINE 3.1.0 Chapter 5 - Set up Apache Tomcat
- SHRINE 3.1.0 Chapter 6 - Install | Configure a Database Service
- SHRINE 3.1.0 Chapter 7 - Install SHRINE Software
- SHRINE 3.1.0 Chapter 8 - SHRINE's Configuration File
- SHRINE 3.1.0 Chapter 9 - Configuring the SHRINE Data Steward
- SHRINE 3.1.0 Chapter 10 - Setting Up the ACT Ontology for SHRINE
- SHRINE 3.1.0 Chapter 11 - Integration With i2b2 Software
- SHRINE 3.1.0 Chapter 12 - Setting Up the SHRINE Keystore
- SHRINE 3.1.0 Chapter 12.1 - Creating a Certificate Signing Request (CSR)
- SHRINE 3.1.0 Chapter 12.2 - Importing Certificates
- SHRINE 3.1.0 Chapter 12.3 - Configuring Certificates
- SHRINE 3.1.0 Chapter 12.4 - Sample server.xml File
- SHRINE 3.1.0 Chapter 12.5 - Using Third-Party-Signed Certificate for Browser Encryption
- SHRINE 3.1.0 Chapter 13 - Connecting to a SHRINE Network
- SHRINE 3.1.0 Chapter 14 - Verifying SHRINE Operation
- SHRINE 3.1.0 SHRINE Install Checklist
- Archived
- Installation Guide - version 1.22.8
- 1 - Introduction
- 2 - Requirements
- 3 - Install | Configure the OS
- 4 - Setting up Apache Tomcat
- 5 - Setting up Java JDK
- 6 - Install | Configure MariaDB
- 7 - Installing SHRINE software
- 8 - SHRINE's Configuration File
- 9 - Configuring the SHRINE Data Steward
- 10 - Setting Up the SHRINE Ontology
- 11 - Integration with i2b2 software
- 12 - Setting up the SHRINE keystore
- 13 - Connection to a SHRINE network
- 14 - Verifying SHRINE Operation
- SHRINE Install Checklist - 1.22.8
- SHRINE 2.0.0 Installation Guide
- Chapter 1 - Introduction
- Chapter 2 - Requirements
- Chapter 3 - Install | Configure the OS
- Chapter 4 - Set up Apache Tomcat
- Chapter 5 - Set up Java JDK
- Chapter 6 - Install | Configure a Database Service
- Chapter 7 - Install SHRINE software
- Chapter 8 - SHRINE's Configuration File
- Chapter 9 - Configuring the SHRINE Data Steward
- Chapter 10 - Setting Up the SHRINE Ontology
- Chapter 11 - Integration with i2b2 software
- Chapter 12 - Setting up the SHRINE keystore
- Chapter 13 - Connecting to a SHRINE network
- Chapter 14 - Verifying SHRINE Operation
- SHRINE Install Checklist
- SHRINE 3.0.0 Installation Guide
- SHRINE 3.0.0 Chapter 1 - Introduction
- SHRINE 3.0.0 Chapter 2 - Requirements
- SHRINE 3.0.0 Chapter 3 - Install | Configure the OS
- SHRINE 3.0.0 Chapter 4 - Set up Java JDK 11
- SHRINE 3.0.0 Chapter 5 - Set up Apache Tomcat
- SHRINE 3.0.0 Chapter 6 - Install | Configure a Database Service
- SHRINE 3.0.0 Chapter 7 - Install SHRINE Software
- SHRINE 3.0.0 Chapter 8 - SHRINE's Configuration File
- SHRINE 3.0.0 Chapter 9 - Configuring the SHRINE Data Steward
- SHRINE 3.0.0 Chapter 10 - Setting Up the ACT Ontology for SHRINE
- SHRINE 3.0.0 Chapter 11 - Integration With i2b2 Software
- SHRINE 3.0.0 Chapter 12 - Setting Up the SHRINE Keystore
- SHRINE 3.0.0 Chapter 12.1 - Creating a Certificate Signing Request (CSR)
- SHRINE 3.0.0 Chapter 12.2 - Importing Certificates
- SHRINE 3.0.0 Chapter 12.3 - Configuring Certificates
- SHRINE 3.0.0 Chapter 12.4 - Sample server.xml File
- SHRINE 3.0.0 Chapter 12.5 - Using Third-Party-Signed Certificate for Browser Encryption
- SHRINE 3.0.0 Chapter 13 - Connecting to a SHRINE Network
- SHRINE 3.0.0 Chapter 14 - Verifying SHRINE Operation
- SHRINE 3.0.0 SHRINE Install Checklist
- SHRINE 3.2.0 Installation Guide
- SHRINE 3.2.0 Chapter 1 - Introduction
- SHRINE 3.2.0 Chapter 2 - Requirements
- SHRINE 3.2.0 Chapter 3 - Install | Configure the OS
- SHRINE 3.2.0 Chapter 4 - Set up Java JDK 11
- SHRINE 3.2.0 Chapter 5 - Set up Apache Tomcat
- SHRINE 3.2.0 Chapter 6 - Install | Configure a Database Service
- SHRINE 3.2.0 Chapter 7 - Install SHRINE Software
- SHRINE 3.2.0 Chapter 8 - SHRINE's Configuration File
- SHRINE 3.2.0 Chapter 9 - Configuring the SHRINE Data Steward
- SHRINE 3.2.0 Chapter 10 - Setting Up the SHRINE Demo Ontology for SHRINE
- SHRINE 3.2.0 Chapter 11 - Integration With i2b2 Software
- SHRINE 3.2.0 Chapter 12 - Setting Up the SHRINE Keystore
- SHRINE 3.2.0 Chapter 12.1 - Creating a Certificate Signing Request (CSR)
- SHRINE 3.2.0 Chapter 12.2 - Importing Certificates
- SHRINE 3.2.0 Chapter 12.3 - Configuring Certificates
- SHRINE 3.2.0 Chapter 12.4 - Sample server.xml File
- SHRINE 3.2.0 Chapter 12.5 - Using Third-Party-Signed Certificate for Browser Encryption
- SHRINE 3.2.0 Chapter 13 - Connecting to a SHRINE Network
- SHRINE 3.2.0 Chapter 14 - Verifying SHRINE Operation
- SHRINE 3.2.0 SHRINE Install Checklist
- Installation Guide - version 1.22.8
- SHRINE 3.2.1 Installation Guide
- Configuration and Connectivity
- Troubleshooting
- Fixing Common Problems
- An unexpected error has occurred
- net.shrine.adapter.AdapterDatabaseProblem
- net.shrine.adapter.AdapterLockout
- net.shrine.adapter.AdapterMappingProblem
- net.shrine.adapter.BotDetected
- net.shrine.adapter.CannotInterpretCrcBreakdownXml
- net.shrine.adapter.CannotParseXmlFromCrc
- net.shrine.adapter.client.CouldNotParseXmlFromAdapter
- net.shrine.adapter.client.HttpErrorCodeFromAdapter
- net.shrine.adapter.components.QueryNotInDatabase
- net.shrine.adapter.CouldNotRetrieveQueryFromCrc
- net.shrine.adapter.CrcCouldNotBeInvoked
- net.shrine.adapter.CRCResultIsErrorWithNoProblem
- net.shrine.adapter.dao.squeryl.BreakdownFailure
- net.shrine.adapter.DoneButHasNoResultsForQueuedQuery
- net.shrine.adapter.ErrorFromCrcBreakdown
- net.shrine.adapter.ExceptionWhileAttemptingToRunQuery
- net.shrine.adapter.ExceptionWhileLoadingCrcResponse
- net.shrine.adapter.NoResultsForQueuedQuery
- net.shrine.adapter.QueryNotFound
- net.shrine.adapter.QueryQueuedTimeToLiveExceeded
- net.shrine.adapter.QueryResultNotAvailable
- net.shrine.adapter.service.CouldNotVerifySignature
- net.shrine.adapter.service.UnknownRequestType
- net.shrine.aggregation.CouldNotConnectToAdapter
- net.shrine.aggregation.CouldNotParseResultsProblem
- net.shrine.aggregation.HttpErrorResponseProblem
- net.shrine.aggregation.InvalidResultProblem
- net.shrine.aggregation.NoValidResponsesToAggregate
- net.shrine.aggregation.TimedOutWithAdapter
- net.shrine.api.qep.AllResultsHaveErrorProblem
- net.shrine.authentication.NotAuthenticatedProblem
- net.shrine.authorization.CouldNotInterpretResponseFromPmCell
- net.shrine.authorization.CouldNotReachPmCell
- net.shrine.authorization.ErrorStatusFromDataStewardApp
- net.shrine.authorization.HMSNotAuthenticatedProblem
- net.shrine.authorization.MissingRequiredRoles
- net.shrine.authorization.NotAuthorizedProblem
- net.shrine.broadcaster.ExceptionWhileSendingMessage
- net.shrine.dashboard.CannotStartDashboard
- net.shrine.hub.data.store.HubDatabaseProblem
- net.shrine.hub.HubDispatchOfQueryProblem
- net.shrine.hub.mom.ExceptionDuringDispatch
- net.shrine.hub.NoAdaptersRunQueriesProblem
- net.shrine.hub.QueryAttemptTimeToLiveExceeded
- net.shrine.messagequeuemiddleware.MessageQueueWebApiServerErrorProblem
- net.shrine.metadata.ExceptionWhilePreparingTimeoutResponse
- net.shrine.metadata.ExceptionWhilePreparingTriggeredResponse
- net.shrine.metadata.ExceptionWhileReceivingMessage
- net.shrine.metadata.ExceptionWhileRequestingQueuedResults
- net.shrine.metadata.NotOkStatusCodeWhileRequestingQueuedResults
- net.shrine.metadata.QepReceiverCouldNotDecodeMessage
- net.shrine.metadata.QepReceiverThreadEndedByThrowable
- net.shrine.problem.ProblemNotYetEncoded
- net.shrine.protocol.ErrorStatusFromCrc
- net.shrine.protocol.version.CouldNotVerifySignature
- net.shrine.qep.AllResultsHaveErrorProblem
- net.shrine.qep.CouldNotSendQueryToHub
- net.shrine.qep.ExceptionWhileHubRanQuery
- net.shrine.qep.IncorrectResponseFromHub
- net.shrine.qep.PreviousQueryDoesNotExist
- net.shrine.qep.QepCouldNotInterpretRequest
- net.shrine.qep.queries.QepDatabaseProblem
- net.shrine.receiver.HasNoAdapter
- net.shrine.status.InvalidVerifySignatureResponse
- net.shrine.steward.CannotStartAuditEmailActor
- net.shrine.steward.CannotStartDsa
- net.shrine.steward.db.StewardDatabaseProblem
- net.shrine.steward.email.CannotConfigureAuditEmailer
- net.shrine.steward.email.CouldNotSendAuditEmail
- Fixing Common Problems
- Network Topologies
- ACT Network "Site Data Details" Configuration
- ACT Next Steps Configuration
- Ontology
- Case Studies
- Community & Support
Overview
Content Tools
Activity