SHRINE
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shrine

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AuthorCommitMessageCommit dateBuilds
XavXav
8e668de2ec5SHRINE2020-1726 : rename NETWORKQUERYID to NETWORK_QUERY_ID (straggler)
XavXav
bf0ba9b1638SHRINE2020-1726 : rename NETWORKQUERYID to NETWORK_QUERY_ID
XavXav
ca828d6e6fdSHRINE2020-1726 : rename networkQueryId to NETWORK_QUERY_ID
XavXav
6c3a3e6ade6SHRINE2020-1726 : rename shrineNodeId to SHRINE_NODE_ID
XavXav
e13ab2ed4d1SHRINE2020-1726 : rename userName to USER_NAME
XavXav
fce13b43299SHRINE2020-1726 : rename shrineNodeId to SHRINE_NODE_ID
Marc-Danie NazaireMarc-Danie Nazaire
a85b4ae33d9SHRINE2020-890 - Institution name displays twice in results tab due to equal time stamps on results in the QEP - Fixe...
XavXav
195a25e0394SHRINE2020-1721 : make the query notes field not labelled as required
Marc-Danie NazaireMarc-Danie Nazaire
21eb5d4d9b8SHRINE2020-890 - Institution name displays twice in results tab due to equal time stamps on results in the QEP - Need...
XavXav
16f1b8c06aaSHRINE2020-890 : committed broken code for Marc-Danie to look at
Marc-Danie NazaireMarc-Danie Nazaire
e0f2ac08207Pull request #1549: Bugfix/SHRINE2020 1723 Merge in SHRINE/shrine from bugfix/SHRINE2020-1723 to develop * commit '...
Marc-Danie NazaireMarc-Danie Nazaire
5bcde0e0016SHRINE2020-1715 - Help link needs to be updated for 4.3.0 - test build
Marc-Danie NazaireMarc-Danie Nazaire
6915019db85Pull request #1552: SHRINE2020-1715 - Help link needs to be updated for 4.3.0 Merge in SHRINE/shrine from bugfix/SHR...
Marc-Danie NazaireMarc-Danie Nazaire
8f4387e0be4SHRINE2020-1715 - Help link needs to be updated for 4.3.0 - Fixed unit test
Marc-Danie NazaireMarc-Danie Nazaire
bfecdf93c21SHRINE2020-1715 - Help link needs to be updated for 4.3.0
XavXav
620107c29d1SHRINE2020-890 : commit this in order to share code
XavXav
69da163fba5SHRINE2020-890 : clean-up test code
XavXav
8880fee386bSHRINE2020-890 : better unit test for measuring response time
Marc-Danie NazaireMarc-Danie Nazaire
aac94172427Pull request #1551: SHRINE2020-1705 - Components that load from "shrine.webclient" are not loading on running the app...
XavXav
a8c5fbf0b5aMerge branch 'develop' into bugfix/SHRINE2020-890-procedural
Marc-Danie NazaireMarc-Danie Nazaire
cfbd5bde79bUpdated mysql base docker image version
Marc-Danie NazaireMarc-Danie Nazaire
d62acc68e08SHRINE2020-1705 - Components that load from "shrine.webclient" are not loading on running the application
Marc-Danie NazaireMarc-Danie Nazaire
716c0db4e9bSHRINE2020-1723 - Overdue query check does not work as expected in 4.3.0 - Code cleanup
Marc-Danie NazaireMarc-Danie Nazaire
31160e7fe0bMerge branch 'develop' of https://open.catalyst.harvard.edu/stash/scm/shrine/shrine into bugfix/SHRINE2020-1723
Marc-Danie NazaireMarc-Danie Nazaire
ece88f3b51fPull request #1548: Bugfix/SHRINE2020 1722 - DB fixes for query notes feature Merge in SHRINE/shrine from bugfix/SHR...
Marc-Danie NazaireMarc-Danie Nazaire
518a61c6b71SHRINE2020-1723 - Overdue query check does not work as expected in 4.3.0 - Possible fix
XavXav
d0afceb560bSHRINE2020-1722 : remove all references to queryNotes and queryFaved from the adapter code
Marc-Danie NazaireMarc-Danie Nazaire
3be61fe78ddSHRINE2020-1722 - DB fixes for query notes feature - set default to null
Marc-Danie NazaireMarc-Danie Nazaire
e69e015f901SHRINE2020-1722 - DB fixes for query notes feature
XavXav
e9c50d0450dSHRINE2020-890 : approach based on scala's maxBy function (not working)
XavXav
6a954748e24SHRINE2020-890 : add "load" test (ignored by default)
XavXav
340d380bcbbSHRINE2020-890 : implement skip and limit
XavXav
445ed68e53aSHRINE2020-890 : clean-up
XavXav
40160372deaSHRINE2020-890 : re-implemented sorting
Marc-Danie NazaireMarc-Danie Nazaire
37d5a1a62d1Fix for db error running QepServiceTest
Marc-Danie NazaireMarc-Danie Nazaire
22778fa1232Get tests working and changes to allow building in Java 17
XavXav
66d0a94fac0SHRINE2020-890 : temporary branch so Marc-Danie can give me a hand
XavXav
7cd1192cb3dSHRINE2020-890 : when 2 or more results (more specifically more than one state transitions) occur for the same query ...
David WalendDavid Walend
aee4113d268Pull request #1545: SHRINE2020 1713 - hub overdue query fixes for SHRINE 4.3 Merge in SHRINE/shrine from feature/SHR...
XavXav
496b1e56f50Merge branch 'develop' into feature/SHRINE2020-1668
XavXav
ddf6943f307Merge branch 'develop' into feature/SHRINE2020-1698
XavXav
a84dbaea66dSHRINE2020-1668 : in the Docker set up scripts, remove references to no-longer-existing DBs on the adapter
Ankit PanchamiaAnkit Panchamia
841e304ad5dPull request #1546: Feature/SHRINE2020 1661 testssopoc Merge in SHRINE/shrine from feature/SHRINE2020-1661-testssopo...
XavXav
3b1485ac3bfSHRINE2020-1698 : improve input-validation messages
XavXav
d6e65a084a3SHRINE2020-1698 : minor clean-up
Ankit PanchamiaAnkit Panchamia
d5aaed6736dinitial POC for multiple IdP: handle NPE case for authorization since the user has a landing page now which can make ...
dwalenddwalend
63b391df037Review comment from Xav for SHRINE2020-1713
XavXav
5f7815bbc73Merge branch 'develop' into feature/SHRINE2020-1698
XavXav
4178e6ca4aeSHRINE2020-1698 : integrate feedback from PR
David WalendDavid Walend
2a4474f22c6Pull request #1544: Needed to trigger some IOs to get errors into the database for SHRINE2020-1714 Merge in SHRINE/s...
XavXav
892f4651dedSHRINE2020-1698 : remove query notes and fave status fields from new queries; also allow query notes to be empty when...
Ankit PanchamiaAnkit Panchamia
ecf5ba3358bMerge branch 'develop' into feature/SHRINE2020-1661-testssopoc
Ankit PanchamiaAnkit Panchamia
8fd151385a2initial POC for multiple IdP: handle NPE case for authorization since the user has a landing page now which can make ...
dwalenddwalend
6826b46abcfPutting back this config bit for SHRINE2020-1712
dwalenddwalend
25354abaf86Scan the results table for overdue queries without locking the whole table for SHRINE2020-1712
XavXav
841ab0afa9aSHRINE2020-1698 : finish making query notes an Option (which fixes the bug in the previous commit)
dwalenddwalend
17a720c7537Needed to trigger some IOs to get errors into the database for SHRINE2020-1714
XavXav
fb5dd515dffSHRINE2020-1698 : this code doesn not compile but I want to be able to share it
David WalendDavid Walend
53dce8f53d1Pull request #1543: Feature/SHRINE2020 1711 Merge in SHRINE/shrine from feature/SHRINE2020-1711 to release/3.3.2 * ...
XavXav
7c8e16b00e3SHRINE2020-1698 : reinstate @Ignore'd unit test, remove Ignore from imports
XavXav
344dd661f6aSHRINE2020-1698 : make query notes optional; rewrite query name/notes validation
David WalendDavid Walend
0560771d3edPull request #1541: Removing six empty database files for SHRINE2020-1667 Merge in SHRINE/shrine from feature/SHRINE...
dwalenddwalend
710fc370e7aQEP test fixes from Marc-Danie to try to get SHRINE2020-1711 building on bamboo
dwalenddwalend
68a7ae5e404More fixes for ontology tests to get 3.3.2 building
dwalenddwalend
eed17c01e29Changes Marc-Danie recommended from 77b9bc09a01 as a fix for some brittle lucene tests
dwalenddwalend
c7cd5e75afeA more involved test for SHRINE2020-1711
dwalenddwalend
a68d22dd8c9Find overdue results without locking the whole RESULTS table for SHRINE2020-1711
XavXav
cebbefac078SHRINE2020-1698 : merge from develop
XavXav
244398613bbSHRINE2020-1698 : fix regression due to code clean-up
dwalenddwalend
2cf930bf680Removing six empty database files for SHRINE2020-1667
XavXav
d831b5fa3cbSHRINE2020-1698 : some code clean-up
XavXav
a87bf02492cSHRINE2020-1698 : make a new changeDate the default when repeatedly clicking the "favorite/star" icon in the queries ...
David WalendDavid Walend
d5c5220cffaPull request #1540: Feature/SHRINE2020 1672 Merge in SHRINE/shrine from feature/SHRINE2020-1672 to develop * commit...
XavXav
10be0ad034cSHRINE2020-1698 : fix the sorting by "faved" status
XavXav
c3bd8cde30bSHRINE2020-1698 : fix the index on the previousQueries.queryFaved column, in all 3 database dialects
XavXav
1acd4059888SHRINE2020-1698 : midway to being able to star/unstar a query
XavXav
c6a99b0fd03SHRINE2020-1698 : add missing js snapshot
dwalenddwalend
bfaa4c0ec89See what this looks like with just byte arrays now that I know about Oracle's Raw type for SHRINE2020-1672
David WalendDavid Walend
2539e428803Pull request #1539: Feature/SHRINE2020 1439 Merge in SHRINE/shrine from feature/SHRINE2020-1439 to develop * commit...
dwalenddwalend
c2e4d6a9c0bdon't need to read the tasty symbols for SHRINE2020-1439
XavXav
e3d702e78f1SHRINE2020-1698 : add back query id in name/notes dialog
XavXav
4a2c26fa18aSHRINE2020-1698 : round-trip query notes
dwalenddwalend
f43ab56e620Try out the RAW type in Oracle for SHRINE2020-1672
dwalenddwalend
946845c7a07Setting up the oracle bug for SHRINE2020-1672
XavXav
f5a13978e91SHRINE2020-1698 : clean-up
XavXav
5a1d0b77335SHRINE2020-1698 : fix bug when creating a new query by passing an empty string for query notes
XavXav
bc44ea0c9b8SHRINE2020-1698 : round-trips changes made to query name and notes. Notes get reset to empty string when the dialog i...
XavXav
8b1ea002ef4SHRINE2020-1698 : builds + all tests pass
Ankit PanchamiaAnkit Panchamia
315a0a04d4fPull request #1538: initial POC for multiple IdP Merge in SHRINE/shrine from feature/SHRINE2020-1661-testssopoc to d...
Ankit PanchamiaAnkit Panchamia
8b7d19cde90initial POC for multiple IdP
XavXav
41824dc5448SHRINE2020-1698 : straggler: part-way commit; unit tests for QEP service fail on a SQL bug that I cannot make sense o...
XavXav
b2135392fb2SHRINE2020-1698 : part-way commit; unit tests for QEP service fail on a SQL bug that I cannot make sense of. Committi...
dwalenddwalend
351857a32dbMy own review of SHRINE2020-1439
dwalenddwalend
544d2758ad0Merge remote-tracking branch 'origin/develop' into feature/SHRINE2020-1439
dwalenddwalend
0a3a7adc8a7Restored the relevant tests for SHRINE2020-1439
dwalenddwalend
c4ab65c2e8cRename and cleanup for SHRINE2020-1439
dwalenddwalend
dc52a8ebdfdGot a test working with the new test framework for SHRINE2020-1439
XavXav
b3127463ac8SHRINE2020-1696 : commit part-way changes in order to check out a-fresh in a new workspace
XavXav
6276cf07165SHRINE2020-1696 : Only update the QEP and the Hub (not the adapter) when editing a query's name
XavXav
c02ef7d8275SHRINE2020-1633, 1643 : remove unused & incorrect port mapping
XavXav
891f00e41d0SHRINE2020-1633, 1643 : remove stale comment
XavXav
587beb7eb49SHRINE2020-1633, 1643 : add details/warning comment
XavXav
13b02dff2deSHRINE2020-1633, 1643 : make JSON/object round-trip tests somewhat less brittle and more readable by allowing the JSO...
XavXav
73cc00ec9b4SHRINE2020-1633, 1643 : merge develop
David WalendDavid Walend
4f059bc10c9Pull request #1536: Some fixes while writing the docs for SHRINE2020-1670 Merge in SHRINE/shrine from feature/SHRINE...
XavXav
7ad842fda61SHRINE2020-1633, 1643 : rollback incorrect changes; formatted json data
XavXav
9754a82d80dSHRINE2020-1633, 1643 : fix reinstated test
XavXav
4931318a8b1SHRINE2020-1633, 1643 : still a dependency on aim3 -- commenting it out for now
XavXav
542a555ceb0Revert "SHRINE2020-1633, 1643 : still a dependency on aim3 -- commenting it out for now" This reverts commit 5d0ce2c...
XavXav
5d0ce2c6e57SHRINE2020-1633, 1643 : still a dependency on aim3 -- commenting it out for now
XavXav
bb745fcc430SHRINE2020-1633, 1643 : update test class name
XavXav
f573fcd942eSHRINE2020-1633, 1643 : fix inadvertent reverse commit
XavXav
7ac768af007SHRINE2020-1633, 1643 : address PR feedback
XavXav
20ba0d748e6Revert "SHRINE2020-1633, 1643 : PR feedback" This reverts commit f9638e2a7948c2a72d164611aaf73c8f7f1f0ad9.
XavXav
80a592dcae2SHRINE2020-1633, 1643 : merge develop branch
dwalenddwalend
02aaad603b8Stray 3
dwalenddwalend
5d4cd242124Cleared out more stray aim3 references. This should fix the build for SHRINE2020-1670
XavXav
66f95bec882SHRINE2020-1633, 1643 : further merge develop branch
dwalenddwalend
0b25cc0f632Messing with the demo for SHRINE2020-1695
dwalenddwalend
276ad715b07Some fixes while writing the docs for SHRINE2020-1670
XavXav
ed528f2ad28SHRINE2020-1633, 1643 : merged develop branch
dwalenddwalend
6ddaaa96fdbDemonstrate scalafix for SHRINE2020-1695
XavXav
667fb0919b3SHRINE2020-1633, 1643 : remove the adapter code that updates a query's favorite status changing; renamed UpdateQuery...
David WalendDavid Walend
0dcda8f729cPull request #1535: Feature/SHRINE2020 1669 Merge in SHRINE/shrine from feature/SHRINE2020-1669 to develop * commit...
David WalendDavid Walend
6bd9ad30bb0Pull request #1532: Feature/SHRINE2020 1664 Merge in SHRINE/shrine from feature/SHRINE2020-1664 to develop * commit...
David WalendDavid Walend
9919ade4eb5Pull request #1531: Feature/SHRINE2020 1665 Merge in SHRINE/shrine from feature/SHRINE2020-1665 to develop * commit...
dwalenddwalend
85adbbfd165Put together a second database interface that plays nice with oracle, and rewired the mapping db to only use byte arr...
dwalenddwalend
20885db4277Preperation to split mapping info before splitting the code to make oracle work for SHRINE2020-1669
dwalenddwalend
8e3af58b969A note on why a test could be ignored for SHRINE2020-1669
dwalenddwalend
816eff29665Isolated the problem with oracle for SHRINE2020-1669
dwalenddwalend
2c737806869Maybe it's the comment SHRINE2020-1669
XavXav
207ca140d6aSHRINE2020-1633, 1643 : remove remnants of query flags/fav in adapter (dead code)
dwalenddwalend
16d0abc9d38Some logging to see what's out of joint for SHRINE2020-1669
dwalenddwalend
7f545136693Split out common code in the servlet world and adapter exe world for SHRINE2020-1669
dwalenddwalend
ecc224728c6Added a deferred keep alive to keep the adapter exec going until a shutdown signal for SHRINE2020-1669
David WalendDavid Walend
abb03ea43e5Pull request #1530: Feature/SHRINE2020 1662 Merge in SHRINE/shrine from feature/SHRINE2020-1662 to develop * commit...
dwalenddwalend
3608ada3b7bSplit out the Node system spec sender and used it in the new exec for SHRINE2020-1669
dwalenddwalend
8b5c8c6754eGot the exec working for SHRINE2020-1669
dwalenddwalend
569a660041dMerge in the prototype work for SHRINE2020-1669
XavXav
4082fb555b5SHRINE2020-1633, 1643 : remove remnants of query flags and flag messages, send favorite data from qep to hub but not ...
dwalenddwalend
8102441b8e0Split out the adapter configs for running with a JNDI system for SHRINE2020-1664
David WalendDavid Walend
c2840598541Pull request #1528: Feature/SHRINE2020 1660 Merge in SHRINE/shrine from feature/SHRINE2020-1660 to develop * commit...
dwalenddwalend
710c6695eb3Moved the adapter mapping table to shrine_query_history, and emptied out the adapterAuditDB schema for SHRHINE2020-1665
XavXav
79b503c020bSHRINE2020-1633, 1643 : some comments to help me keep track of things
David WalendDavid Walend
67422aae4f7Pull request #1527: Feature/SHRINE2020 1659 Merge in SHRINE/shrine from feature/SHRINE2020-1659 to develop * commit...
dwalenddwalend
b52db919c5aRemoved adapter audit database code for SHRINE2020-1662
dwalenddwalend
f75f4da9931Removed the AdapterAudtDb code for SHRINE2020-1662
dwalenddwalend
1069032e82fRemoved all calls to the audit db for SHRINE2020-1662
David WalendDavid Walend
966e989e316Pull request #1526: Feature/SHRINE2020 1658 Merge in SHRINE/shrine from feature/SHRINE2020-1658 to develop * commit...
David WalendDavid Walend
9f26bc7836fPull request #1529: Feature/SHRINE2020 1218 cats effect upgrade Merge in SHRINE/shrine from feature/SHRINE2020-1218-...
David WalendDavid Walend
ad866f30bbbPull request #1525: Feature/SHRINE2020 1655 Merge in SHRINE/shrine from feature/SHRINE2020-1655 to feature/SHRINE202...
Ankit PanchamiaAnkit Panchamia
56399a1ab97inital POC for multiple IdP
David WalendDavid Walend
8b8d805a64cPull request #1524: Feature/SHRINE2020 1653 Merge in SHRINE/shrine from feature/SHRINE2020-1653 to feature/SHRINE202...
dwalenddwalend
097935a6a34Removed aim3 from the build for SHRINE2020-1660
dwalenddwalend
ce6a6c95039Cleaned out the last of the scala import blocks for aim3 for SHRINE2020-1659
dwalenddwalend
ab74e7ef0d5Added some comments for some suspicious adapter DB code in SHRINE2020-1659
dwalenddwalend
ce1aa3f268bRemoved QueryMaster and co for SHRINE2020-1659
dwalenddwalend
407118ee38dRipping a lot of aim3 things out of the adapter for SHRINE2020-1659
dwalenddwalend
d4070343596Medium-sized delete for aim3 for SHRINE2020-1659
dwalenddwalend
cc0012a5278Gutted aim3 to just imports for SHRINE2020-1658
David WalendDavid Walend
bca01967bccPull request #1523: Bugfix/SHRINE2020 1654 Merge in SHRINE/shrine from bugfix/SHRINE2020-1654 to feature/SHRINE2020-...
XavXav
82a77bcfc72SHRINE2020-1633, 1643 : PR feedback
David WalendDavid Walend
7a9498f759fPull request #1522: Feature/SHRINE2020 1652 Merge in SHRINE/shrine from feature/SHRINE2020-1652 to feature/SHRINE202...
dwalenddwalend
f156de1dbc9cats effect IO's theads are daemon by default - no reason to do anything to get that - SHRINE2020-1655
dwalenddwalend
5172e7d992aAdded back the LocalMessageQueueStopper stop call for SHRINE2020-1653
dwalenddwalend
ed4ab99ef02Restoring the breakdowns to the jmeter file for SHRINE2020-1654
XavXav
f9638e2a794SHRINE2020-1633, 1643 : PR feedback
dwalenddwalend
ccdc07649dcRefactored the legacy client to handle both PM cell and CRC cell requests for SHRINE2020-1654
dwalenddwalend
e6f7ab004e8Small profound changes to fix problems at scale for SHRINE2020-1654
XavXav
0d30f50153fSHRINE2020-1633, 1643 : fix 2 bugs in the frontend : saving favorite status + ability to sort by favoriteness
David WalendDavid Walend
f72ed9e1c8aPull request #1521: Bugfix/SHRINE2020 1650 Merge in SHRINE/shrine from bugfix/SHRINE2020-1650 to feature/SHRINE2020-...
dwalenddwalend
52cecea0622Removed soem uninteresting logging for SHRINE2020-1654
dwalenddwalend
0a0ce19b997Try a separate semaphore limit for PM cell calls for SHRINE2020-1654
David WalendDavid Walend
1c1d71bdb6aPull request #1519: Feature/SHRINE-2866 Merge in SHRINE/shrine from feature/SHRINE-2866 to feature/SHRINE2020-1218-c...
David WalendDavid Walend
e3dca780ef0Pull request #1518: Bugfix/SHRINE2020 1632 Merge in SHRINE/shrine from bugfix/SHRINE2020-1632 to feature/SHRINE2020-...
dwalenddwalend
c8d279d8fc9Moved the timeout to the right spot and got rid of the unneeded execution context for SHRINE2020-1654
dwalenddwalend
d32d0f51ff7Use a semaphore to limit the number of i2b2 calls (instead of a thread pool) for SHRINE2020-1654
David WalendDavid Walend
ee34a13ec5bPull request #1517: Feature/SHRINE2020 1218 fix Merge in SHRINE/shrine from feature/SHRINE2020-1218-fix to feature/S...
Marc-Danie NazaireMarc-Danie Nazaire
0b625f0f1c7SHRINE2020-1631 - Prototype a map of patient count results - Code cleanup
Marc-Danie NazaireMarc-Danie Nazaire
d89d844fc34SHRINE2020-1631 - Prototype a map of patient count results - Code cleanup
Marc-Danie NazaireMarc-Danie Nazaire
fdbf00dce41SHRINE2020-1631 - Prototype a map of patient count results -Modified to rescale circles as new results arrive
David WalendDavid Walend
db7e6454696Pull request #1516: Feature/SHRINE2020 1642 Merge in SHRINE/shrine from feature/SHRINE2020-1642 to feature/SHRINE202...
XavXav
b926196146cSHRINE2020-1644 : remove all remaining references to "flag" in adapter module
XavXav
17f058c628dSHRINE2020-1644 : fix retrieving previous queries
XavXav
c25f8cee7b2SHRINE2020-1644 : lots of changes but fails retrieving previous queries
dwalenddwalend
d2329eda498Removed the unused implicit from RetryIO for SHRINE2020-1652
dwalenddwalend
a47acafec89Merge branch 'feature/SHRINE2020-1637' into feature/SHRINE2020-1652
Marc-Danie NazaireMarc-Danie Nazaire
a8262615e08SHRINE2020-1631 - Prototype a map of patient count results -Modified to reduce size of circles and edit title of acco...
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