SHRINE
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AuthorCommitMessageCommit dateBuilds
XavXav
48d301bf4bfSHRINE2020-890 : clean-up test code
XavXav
195ecc5fd25SHRINE2020-890 : better unit test for measuring response time
Marc-Danie NazaireMarc-Danie Nazaire
f0eb5f0d536Pull request #1551: SHRINE2020-1705 - Components that load from "shrine.webclient" are not loading on running the app...
XavXav
9134baa05d0Merge branch 'develop' into bugfix/SHRINE2020-890-procedural
Marc-Danie NazaireMarc-Danie Nazaire
b4ef0bc60b6Updated mysql base docker image version
Marc-Danie NazaireMarc-Danie Nazaire
bb513a2af4fSHRINE2020-1705 - Components that load from "shrine.webclient" are not loading on running the application
Marc-Danie NazaireMarc-Danie Nazaire
45f27d5952eSHRINE2020-1723 - Overdue query check does not work as expected in 4.3.0 - Code cleanup
Marc-Danie NazaireMarc-Danie Nazaire
4bc6a064b9eMerge branch 'develop' of https://open.catalyst.harvard.edu/stash/scm/shrine/shrine into bugfix/SHRINE2020-1723
Marc-Danie NazaireMarc-Danie Nazaire
9f0ac593419Pull request #1548: Bugfix/SHRINE2020 1722 - DB fixes for query notes feature Merge in SHRINE/shrine from bugfix/SHR...
Marc-Danie NazaireMarc-Danie Nazaire
3bfeef5b33aSHRINE2020-1723 - Overdue query check does not work as expected in 4.3.0 - Possible fix
XavXav
da3bc638730SHRINE2020-1722 : remove all references to queryNotes and queryFaved from the adapter code
Marc-Danie NazaireMarc-Danie Nazaire
470949268f3SHRINE2020-1722 - DB fixes for query notes feature - set default to null
Marc-Danie NazaireMarc-Danie Nazaire
660b86dd50dSHRINE2020-1722 - DB fixes for query notes feature
XavXav
4a659338d05SHRINE2020-890 : approach based on scala's maxBy function (not working)
XavXav
743c6d1ff90SHRINE2020-890 : add "load" test (ignored by default)
XavXav
c8611b94b3bSHRINE2020-890 : implement skip and limit
XavXav
14b27384948SHRINE2020-890 : clean-up
XavXav
502582bf3b3SHRINE2020-890 : re-implemented sorting
Marc-Danie NazaireMarc-Danie Nazaire
d927c06d818Fix for db error running QepServiceTest
Marc-Danie NazaireMarc-Danie Nazaire
0c53c8c71e7Get tests working and changes to allow building in Java 17
XavXav
766e13c5b02SHRINE2020-890 : temporary branch so Marc-Danie can give me a hand
XavXav
111ba03c24bSHRINE2020-890 : when 2 or more results (more specifically more than one state transitions) occur for the same query ...
David WalendDavid Walend
b931ac69989Pull request #1545: SHRINE2020 1713 - hub overdue query fixes for SHRINE 4.3 Merge in SHRINE/shrine from feature/SHR...
XavXav
78bf7e17162Merge branch 'develop' into feature/SHRINE2020-1668
XavXav
d60979ca34cMerge branch 'develop' into feature/SHRINE2020-1698
XavXav
2ad1f4ba81cSHRINE2020-1668 : in the Docker set up scripts, remove references to no-longer-existing DBs on the adapter
Ankit PanchamiaAnkit Panchamia
4c7202b91ccPull request #1546: Feature/SHRINE2020 1661 testssopoc Merge in SHRINE/shrine from feature/SHRINE2020-1661-testssopo...
XavXav
ca06cdbe7cdSHRINE2020-1698 : improve input-validation messages
XavXav
d526a7858e0SHRINE2020-1698 : minor clean-up
Ankit PanchamiaAnkit Panchamia
49888c95f39initial POC for multiple IdP: handle NPE case for authorization since the user has a landing page now which can make ...
dwalenddwalend
6e75b77165bReview comment from Xav for SHRINE2020-1713
XavXav
e69e697912bMerge branch 'develop' into feature/SHRINE2020-1698
XavXav
da79c18f745SHRINE2020-1698 : integrate feedback from PR
David WalendDavid Walend
ed92248b549Pull request #1544: Needed to trigger some IOs to get errors into the database for SHRINE2020-1714 Merge in SHRINE/s...
XavXav
b65dde689b3SHRINE2020-1698 : remove query notes and fave status fields from new queries; also allow query notes to be empty when...
Ankit PanchamiaAnkit Panchamia
a741be2d6afMerge branch 'develop' into feature/SHRINE2020-1661-testssopoc
Ankit PanchamiaAnkit Panchamia
4d34805d08einitial POC for multiple IdP: handle NPE case for authorization since the user has a landing page now which can make ...
dwalenddwalend
821308e7e88Putting back this config bit for SHRINE2020-1712
dwalenddwalend
aebb08f093aScan the results table for overdue queries without locking the whole table for SHRINE2020-1712
XavXav
03edd3db0b7SHRINE2020-1698 : finish making query notes an Option (which fixes the bug in the previous commit)
dwalenddwalend
4ffa402b785Needed to trigger some IOs to get errors into the database for SHRINE2020-1714
XavXav
0bccdcca5a7SHRINE2020-1698 : this code doesn not compile but I want to be able to share it
David WalendDavid Walend
fb9ab393590Pull request #1543: Feature/SHRINE2020 1711 Merge in SHRINE/shrine from feature/SHRINE2020-1711 to release/3.3.2 * ...
XavXav
1c98ef1ade3SHRINE2020-1698 : reinstate @Ignore'd unit test, remove Ignore from imports
XavXav
50f1a6ff886SHRINE2020-1698 : make query notes optional; rewrite query name/notes validation
David WalendDavid Walend
c66c8a16595Pull request #1541: Removing six empty database files for SHRINE2020-1667 Merge in SHRINE/shrine from feature/SHRINE...
dwalenddwalend
0d5dd69819aQEP test fixes from Marc-Danie to try to get SHRINE2020-1711 building on bamboo
dwalenddwalend
64ac53d7530More fixes for ontology tests to get 3.3.2 building
dwalenddwalend
e87031d25bdChanges Marc-Danie recommended from 3912c183897 as a fix for some brittle lucene tests
dwalenddwalend
95a31df2992A more involved test for SHRINE2020-1711
dwalenddwalend
222d3352197Find overdue results without locking the whole RESULTS table for SHRINE2020-1711
XavXav
af25bab6e3aSHRINE2020-1698 : merge from develop
XavXav
6751fa5f5aeSHRINE2020-1698 : fix regression due to code clean-up
dwalenddwalend
00459fac262Removing six empty database files for SHRINE2020-1667
XavXav
43b820861e1SHRINE2020-1698 : some code clean-up
XavXav
7215f5e0b09SHRINE2020-1698 : make a new changeDate the default when repeatedly clicking the "favorite/star" icon in the queries ...
David WalendDavid Walend
75a574bb95aPull request #1540: Feature/SHRINE2020 1672 Merge in SHRINE/shrine from feature/SHRINE2020-1672 to develop * commit...
XavXav
fefd03877e1SHRINE2020-1698 : fix the sorting by "faved" status
XavXav
ebe6071020dSHRINE2020-1698 : fix the index on the previousQueries.queryFaved column, in all 3 database dialects
XavXav
0ac1127091fSHRINE2020-1698 : midway to being able to star/unstar a query
XavXav
25c75007616SHRINE2020-1698 : add missing js snapshot
dwalenddwalend
c40468d82c9See what this looks like with just byte arrays now that I know about Oracle's Raw type for SHRINE2020-1672
David WalendDavid Walend
ba1a81034d9Pull request #1539: Feature/SHRINE2020 1439 Merge in SHRINE/shrine from feature/SHRINE2020-1439 to develop * commit...
dwalenddwalend
c3d74f5af30don't need to read the tasty symbols for SHRINE2020-1439
XavXav
118da04d7dfSHRINE2020-1698 : add back query id in name/notes dialog
XavXav
9f92ffb60feSHRINE2020-1698 : round-trip query notes
dwalenddwalend
17a62ef7ca7Try out the RAW type in Oracle for SHRINE2020-1672
dwalenddwalend
ef4d0ad2cd9Setting up the oracle bug for SHRINE2020-1672
XavXav
85314cab345SHRINE2020-1698 : clean-up
XavXav
b740488ef20SHRINE2020-1698 : fix bug when creating a new query by passing an empty string for query notes
XavXav
8e1e38e1f0aSHRINE2020-1698 : round-trips changes made to query name and notes. Notes get reset to empty string when the dialog i...
XavXav
32950dab843SHRINE2020-1698 : builds + all tests pass
Ankit PanchamiaAnkit Panchamia
c21cc29f2e0Pull request #1538: initial POC for multiple IdP Merge in SHRINE/shrine from feature/SHRINE2020-1661-testssopoc to d...
Ankit PanchamiaAnkit Panchamia
dda635fac11initial POC for multiple IdP
XavXav
cf7cf821b9aSHRINE2020-1698 : straggler: part-way commit; unit tests for QEP service fail on a SQL bug that I cannot make sense o...
XavXav
9d875152716SHRINE2020-1698 : part-way commit; unit tests for QEP service fail on a SQL bug that I cannot make sense of. Committi...
dwalenddwalend
db3d5d48596My own review of SHRINE2020-1439
dwalenddwalend
9173c3fe862Merge remote-tracking branch 'origin/develop' into feature/SHRINE2020-1439
dwalenddwalend
379180c49b8Restored the relevant tests for SHRINE2020-1439
dwalenddwalend
88bf194c72aRename and cleanup for SHRINE2020-1439
dwalenddwalend
a64c1618b3eGot a test working with the new test framework for SHRINE2020-1439
XavXav
2499a6f50adSHRINE2020-1696 : commit part-way changes in order to check out a-fresh in a new workspace
XavXav
27509fc9095SHRINE2020-1696 : Only update the QEP and the Hub (not the adapter) when editing a query's name
XavXav
aa7d94ade64SHRINE2020-1633, 1643 : remove unused & incorrect port mapping
XavXav
0f2734510caSHRINE2020-1633, 1643 : remove stale comment
XavXav
6676c2e669dSHRINE2020-1633, 1643 : add details/warning comment
XavXav
21566b2b7c4SHRINE2020-1633, 1643 : make JSON/object round-trip tests somewhat less brittle and more readable by allowing the JSO...
XavXav
4ec76551d6aSHRINE2020-1633, 1643 : merge develop
David WalendDavid Walend
c4a2dfbb871Pull request #1536: Some fixes while writing the docs for SHRINE2020-1670 Merge in SHRINE/shrine from feature/SHRINE...
XavXav
cef7d044f03SHRINE2020-1633, 1643 : rollback incorrect changes; formatted json data
XavXav
fe43de2c29fSHRINE2020-1633, 1643 : fix reinstated test
XavXav
c1b6d9bf6c8SHRINE2020-1633, 1643 : still a dependency on aim3 -- commenting it out for now
XavXav
a50d20bca56Revert "SHRINE2020-1633, 1643 : still a dependency on aim3 -- commenting it out for now" This reverts commit 391172d...
XavXav
391172d8d94SHRINE2020-1633, 1643 : still a dependency on aim3 -- commenting it out for now
XavXav
e64d89d879fSHRINE2020-1633, 1643 : update test class name
XavXav
df94be3cdd0SHRINE2020-1633, 1643 : fix inadvertent reverse commit
XavXav
e37dd5ebb06SHRINE2020-1633, 1643 : address PR feedback
XavXav
b8abec59160Revert "SHRINE2020-1633, 1643 : PR feedback" This reverts commit 29b6b82900f76ed96094ed344bdb2665e1a9c846.
XavXav
d0003a43e09SHRINE2020-1633, 1643 : merge develop branch
dwalenddwalend
4041914663fStray 3
dwalenddwalend
adb05d07581Cleared out more stray aim3 references. This should fix the build for SHRINE2020-1670
XavXav
ea5207ecc96SHRINE2020-1633, 1643 : further merge develop branch
dwalenddwalend
2ebd5c8b255Messing with the demo for SHRINE2020-1695
dwalenddwalend
cac5e7352feSome fixes while writing the docs for SHRINE2020-1670
XavXav
a26c9cffeccSHRINE2020-1633, 1643 : merged develop branch
dwalenddwalend
e7974a489c1Demonstrate scalafix for SHRINE2020-1695
XavXav
13bc43ceb69SHRINE2020-1633, 1643 : remove the adapter code that updates a query's favorite status changing; renamed UpdateQuery...
David WalendDavid Walend
7707a3cd1fePull request #1535: Feature/SHRINE2020 1669 Merge in SHRINE/shrine from feature/SHRINE2020-1669 to develop * commit...
David WalendDavid Walend
1d0c94a2306Pull request #1532: Feature/SHRINE2020 1664 Merge in SHRINE/shrine from feature/SHRINE2020-1664 to develop * commit...
David WalendDavid Walend
c28806f5697Pull request #1531: Feature/SHRINE2020 1665 Merge in SHRINE/shrine from feature/SHRINE2020-1665 to develop * commit...
dwalenddwalend
b4be37333f4Put together a second database interface that plays nice with oracle, and rewired the mapping db to only use byte arr...
dwalenddwalend
982f593db02Preperation to split mapping info before splitting the code to make oracle work for SHRINE2020-1669
dwalenddwalend
d1d2e631897A note on why a test could be ignored for SHRINE2020-1669
dwalenddwalend
615ce15ec59Isolated the problem with oracle for SHRINE2020-1669
dwalenddwalend
c855c02ad96Maybe it's the comment SHRINE2020-1669
XavXav
801c57a102aSHRINE2020-1633, 1643 : remove remnants of query flags/fav in adapter (dead code)
dwalenddwalend
43f0ee58657Some logging to see what's out of joint for SHRINE2020-1669
dwalenddwalend
4245deb212dSplit out common code in the servlet world and adapter exe world for SHRINE2020-1669
dwalenddwalend
33b27b3c8dfAdded a deferred keep alive to keep the adapter exec going until a shutdown signal for SHRINE2020-1669
David WalendDavid Walend
de5c2e31b9cPull request #1530: Feature/SHRINE2020 1662 Merge in SHRINE/shrine from feature/SHRINE2020-1662 to develop * commit...
dwalenddwalend
5c10463a919Split out the Node system spec sender and used it in the new exec for SHRINE2020-1669
dwalenddwalend
ae137627a2cGot the exec working for SHRINE2020-1669
dwalenddwalend
c481f8a9a13Merge in the prototype work for SHRINE2020-1669
XavXav
f118deddaddSHRINE2020-1633, 1643 : remove remnants of query flags and flag messages, send favorite data from qep to hub but not ...
dwalenddwalend
a71bfda5877Split out the adapter configs for running with a JNDI system for SHRINE2020-1664
David WalendDavid Walend
02e14c9f59ePull request #1528: Feature/SHRINE2020 1660 Merge in SHRINE/shrine from feature/SHRINE2020-1660 to develop * commit...
dwalenddwalend
db495ad265cMoved the adapter mapping table to shrine_query_history, and emptied out the adapterAuditDB schema for SHRHINE2020-1665
XavXav
a44b5293ee5SHRINE2020-1633, 1643 : some comments to help me keep track of things
David WalendDavid Walend
469abb7176bPull request #1527: Feature/SHRINE2020 1659 Merge in SHRINE/shrine from feature/SHRINE2020-1659 to develop * commit...
dwalenddwalend
4a22e0bc746Removed adapter audit database code for SHRINE2020-1662
dwalenddwalend
f8456760254Removed the AdapterAudtDb code for SHRINE2020-1662
dwalenddwalend
2ffcad4d787Removed all calls to the audit db for SHRINE2020-1662
David WalendDavid Walend
a117b9d5280Pull request #1526: Feature/SHRINE2020 1658 Merge in SHRINE/shrine from feature/SHRINE2020-1658 to develop * commit...
David WalendDavid Walend
4aa09747b67Pull request #1529: Feature/SHRINE2020 1218 cats effect upgrade Merge in SHRINE/shrine from feature/SHRINE2020-1218-...
David WalendDavid Walend
ed11f574140Pull request #1525: Feature/SHRINE2020 1655 Merge in SHRINE/shrine from feature/SHRINE2020-1655 to feature/SHRINE202...
Ankit PanchamiaAnkit Panchamia
1d719aaeb54inital POC for multiple IdP
David WalendDavid Walend
6844427fceaPull request #1524: Feature/SHRINE2020 1653 Merge in SHRINE/shrine from feature/SHRINE2020-1653 to feature/SHRINE202...
dwalenddwalend
b8734204dd8Removed aim3 from the build for SHRINE2020-1660
dwalenddwalend
96213b1e8edCleaned out the last of the scala import blocks for aim3 for SHRINE2020-1659
dwalenddwalend
82d401a482cAdded some comments for some suspicious adapter DB code in SHRINE2020-1659
dwalenddwalend
6624ff35031Removed QueryMaster and co for SHRINE2020-1659
dwalenddwalend
f581fc9460eRipping a lot of aim3 things out of the adapter for SHRINE2020-1659
dwalenddwalend
3dd079f38b6Medium-sized delete for aim3 for SHRINE2020-1659
dwalenddwalend
8d553f4b1ecGutted aim3 to just imports for SHRINE2020-1658
David WalendDavid Walend
e5c6a93d86ePull request #1523: Bugfix/SHRINE2020 1654 Merge in SHRINE/shrine from bugfix/SHRINE2020-1654 to feature/SHRINE2020-...
XavXav
c01954fcdf4SHRINE2020-1633, 1643 : PR feedback
David WalendDavid Walend
3902a8565a1Pull request #1522: Feature/SHRINE2020 1652 Merge in SHRINE/shrine from feature/SHRINE2020-1652 to feature/SHRINE202...
dwalenddwalend
89e0cc46369cats effect IO's theads are daemon by default - no reason to do anything to get that - SHRINE2020-1655
dwalenddwalend
bb952132755Added back the LocalMessageQueueStopper stop call for SHRINE2020-1653
dwalenddwalend
c06eefc2dcaRestoring the breakdowns to the jmeter file for SHRINE2020-1654
XavXav
29b6b82900fSHRINE2020-1633, 1643 : PR feedback
dwalenddwalend
9df08f0cdf4Refactored the legacy client to handle both PM cell and CRC cell requests for SHRINE2020-1654
dwalenddwalend
6c764e1ce88Small profound changes to fix problems at scale for SHRINE2020-1654
XavXav
27554194245SHRINE2020-1633, 1643 : fix 2 bugs in the frontend : saving favorite status + ability to sort by favoriteness
David WalendDavid Walend
32a01f2bd06Pull request #1521: Bugfix/SHRINE2020 1650 Merge in SHRINE/shrine from bugfix/SHRINE2020-1650 to feature/SHRINE2020-...
dwalenddwalend
9cc4d27eabaRemoved soem uninteresting logging for SHRINE2020-1654
dwalenddwalend
c8f056691c9Try a separate semaphore limit for PM cell calls for SHRINE2020-1654
David WalendDavid Walend
da8fc29cdffPull request #1519: Feature/SHRINE-2866 Merge in SHRINE/shrine from feature/SHRINE-2866 to feature/SHRINE2020-1218-c...
David WalendDavid Walend
27c18635d62Pull request #1518: Bugfix/SHRINE2020 1632 Merge in SHRINE/shrine from bugfix/SHRINE2020-1632 to feature/SHRINE2020-...
dwalenddwalend
88a394b12c1Moved the timeout to the right spot and got rid of the unneeded execution context for SHRINE2020-1654
dwalenddwalend
a365a1f8e1fUse a semaphore to limit the number of i2b2 calls (instead of a thread pool) for SHRINE2020-1654
David WalendDavid Walend
b1fcdb35ae5Pull request #1517: Feature/SHRINE2020 1218 fix Merge in SHRINE/shrine from feature/SHRINE2020-1218-fix to feature/S...
Marc-Danie NazaireMarc-Danie Nazaire
eed22efd631SHRINE2020-1631 - Prototype a map of patient count results - Code cleanup
Marc-Danie NazaireMarc-Danie Nazaire
a6294b1895fSHRINE2020-1631 - Prototype a map of patient count results - Code cleanup
Marc-Danie NazaireMarc-Danie Nazaire
5685bbf8de7SHRINE2020-1631 - Prototype a map of patient count results -Modified to rescale circles as new results arrive
David WalendDavid Walend
8706eb208faPull request #1516: Feature/SHRINE2020 1642 Merge in SHRINE/shrine from feature/SHRINE2020-1642 to feature/SHRINE202...
XavXav
a25257f7df0SHRINE2020-1644 : remove all remaining references to "flag" in adapter module
XavXav
a3fbbab085eSHRINE2020-1644 : fix retrieving previous queries
XavXav
f81cca854e5SHRINE2020-1644 : lots of changes but fails retrieving previous queries
dwalenddwalend
73761dd07f2Removed the unused implicit from RetryIO for SHRINE2020-1652
dwalenddwalend
fbce38c4751Merge branch 'feature/SHRINE2020-1637' into feature/SHRINE2020-1652
Marc-Danie NazaireMarc-Danie Nazaire
275571c922dSHRINE2020-1631 - Prototype a map of patient count results -Modified to reduce size of circles and edit title of acco...
dwalenddwalend
d464101a347Tweak RetryIO in a chaser ticket
dwalenddwalend
2121c43bcc2Cleanup for SHRINE2020-1650
Marc-Danie NazaireMarc-Danie Nazaire
7bda4a80bfeSHRINE2020-1631 - Prototype a map of patient count results -Modified to create circle markers instead of circles
dwalenddwalend
2763b61e167Got messages logner than 4k sending for SHRINE2020-1650
dwalenddwalend
c7535cee41eMore logging to maybe bracket the problem for SHRINE2020-1650
dwalenddwalend
71d22dc5906More logging to maybe bracket the problem for SHRINE2020-1650
dwalenddwalend
43be3c369e6Some more logging to examine SHRINE2020-1650
dwalenddwalend
83ae9dfcb5aMerge branch 'feature/SHRINE2020-1637' into bugfix/SHRINE2020-1650
dwalenddwalend
0c922dc8d32Code review suggestion from Xav for SHRINE2020-1642
Marc-Danie NazaireMarc-Danie Nazaire
ba7cc422704SHRINE2020-1631 - Prototype a map of patient count results - Added use of fit to bounds, removed zoom controls and at...
Marc-Danie NazaireMarc-Danie Nazaire
d7c474e3a48SHRINE2020-1631 - Prototype a map of patient count results - Fixed error
Marc-Danie NazaireMarc-Danie Nazaire
53426cda36aSHRINE2020-1631 - Prototype a map of patient count results - Debug statements
Marc-Danie NazaireMarc-Danie Nazaire
b6fec92d165SHRINE2020-1631 - Prototype a map of patient count results - fixed map center
Marc-Danie NazaireMarc-Danie Nazaire
0c5c1e66825SHRINE2020-1631 - Prototype a map of patient count results - removed check for existing insitutitions
Marc-Danie NazaireMarc-Danie Nazaire
59eb97b8afdSHRINE2020-1631 - Prototype a map of patient count results - added zoom back
Marc-Danie NazaireMarc-Danie Nazaire
39ce7d2a4a6SHRINE2020-1631 - Prototype a map of patient count results - Update accordion title
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