You are viewing an old version of this page. View the current version.

Compare with Current View Page History

« Previous Version 79 Next »

eagle-i software is available under a BSD 3 license.

Wonder Lake Software offers technical support and software engineering services to organizations wishing to integrate with, customize or extend the eagle-i platform.

Contents

NEW: Getting started: for system administrators, install in the Amazon Cloud

Follow instructions in this page: Installation, Upgrade and Administration of eagle-i in the Amazon Cloud

Getting started: for system administrators, install from packaged binaries

System requirements

The current eagle-i network deployment is a reference configuration. In this deployment, eagle-i nodes are VMs with the following configuration:

  • RAM: 6 GB
  • Disk: 100 GB
  • CPU: 2 core
  • Operating system: CentOS (previously Fedora 14)
  • Java environment: Sun JDK v. 1.7.0_17, 64 bit (Java 7 is a requirement. Other JDKs may work)
  • Servlet container: Tomcat 7
  • RDBMS: MySQL 5.1 (used for logging search usage)
  • Mail server: postfix (used to enable resource owner contact feature in Search pages)

In addition, the eagle-i network uses a central server for hosting the central search application and a few other central services. The configuration of the central server is similar to that of the institutional servers.

Download and install eagle-i software

To spin up an eagle-i node, you will need to download: Repository distribution, SWEET webapp, Online help webapp and optionally Institutional Search webapp. 

For detailed installation guides, see: Documentation

 

Component

Releases

Snapshots (daily builds)

What to download?

Installation/usage

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="96b7559f-3736-4649-af81-5ac9436d8ac1"><ac:plain-text-body><![CDATA[

Institution

Repository distribution

[Repository releases

http://infra.search.eagle-i.net:8081/nexus/content/repositories/releases/org/eagle-i/eagle-i-repository-dist/]

[Repository snapshots

http://infra.search.eagle-i.net:8081/nexus/content/repositories/snapshots/org/eagle-i/eagle-i-repository-dist/]

eagle-i-repository-dist-[version].zip

[Repository Administrator Guide

Repository Installation, Upgrade and Administration Guide]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="e5276666-3ebc-48ea-8cf1-7a2e20b85dd6"><ac:plain-text-body><![CDATA[

Institution 

SWEET webapp

[SWEET releases

http://infra.search.eagle-i.net:8081/nexus/content/repositories/releases/org/eagle-i/eagle-i-webapp-sweet/]

[SWEET snapshots

http://infra.search.eagle-i.net:8081/nexus/content/repositories/snapshots/org/eagle-i/eagle-i-webapp-sweet/]

eagle-i-webapp-sweet-[version].war

[Application Installation guide

SWEET and Institutional Search Installation and Upgrade Guide]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d985ddb2-0e55-44c2-9ba9-6b11e4306fbb"><ac:plain-text-body><![CDATA[

Institution

Institutional search webapp

[Insitutional search releases

http://infra.search.eagle-i.net:8081/nexus/content/repositories/releases/org/eagle-i/eagle-i-webapp-institution/]

[Institutional search snapshots

http://infra.search.eagle-i.net:8081/nexus/content/repositories/snapshots/org/eagle-i/eagle-i-webapp-institution/]

eagle-i-webapp-institution-[version].war

[Application installation guide

SWEET and Institutional Search Installation and Upgrade Guide]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="98009031-9dc3-42a6-bb4a-1762dca879d9"><ac:plain-text-body><![CDATA[

Institution

Online help webapp

[Help releases

http://infra.search.eagle-i.net:8081/nexus/content/repositories/releases/org/eagle-i/eagle-i-help/]

[Help snapshots

http://infra.search.eagle-i.net:8081/nexus/content/repositories/snapshots/org/eagle-i/eagle-i-help/]

eagle-i-help-[version].war

[Application installation guide

SWEET and Institutional Search Installation and Upgrade Guide]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="0782e617-a051-4f56-9749-8d0dfe26fc8b"><ac:plain-text-body><![CDATA[

all

Data management toolkit

[Data management toolkit releases

http://infra.search.eagle-i.net:8081/nexus/content/repositories/releases/org/eagle-i/eagle-i-datatools-datamanagement/]

[Data management toolkit snapshots

http://infra.search.eagle-i.net:8081/nexus/content/repositories/snapshots/org/eagle-i/eagle-i-datatools-datamanagement/]

eagle-i-datatools-datamanagement-[version].jar

[Data Management Toolkit Guide

eaglei:Data Management Toolkit]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="2ab2d538-1e07-4ad6-a2d5-f5333eb6e0d3"><ac:plain-text-body><![CDATA[

all

SWIFT toolkit (ETL)

To be released (2.0MS3)

[SWIFT toolkit snapshots

http://infra.search.eagle-i.net:8081/nexus/content/repositories/snapshots/org/eagle-i/eagle-i-datatools-etl-dist/]

eagle-i-datatools-etl-dist-[version].jar

[SWIFT Toolkit Guide

eaglei:SWIFT]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="03bf93af-1dff-493d-90f1-fa568ce42c56"><ac:plain-text-body><![CDATA[

Central 

Central search webapp

[Central search releases

http://infra.search.eagle-i.net:8081/nexus/content/repositories/releases/org/eagle-i/eagle-i-webapp-central/]

[Central search snapshots

http://infra.search.eagle-i.net:8081/nexus/content/repositories/snapshots/org/eagle-i/eagle-i-webapp-central/]

eagle-i-webapp-central-[version].war

(coming soon)

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="003a8d54-5df1-4e19-8f7d-9351657451c4"><ac:plain-text-body><![CDATA[

Central

Node registry

[Node registry releases

http://infra.search.eagle-i.net:8081/nexus/content/repositories/releases/org/eagle-i/eagle-i-webapp-noderegistry/]

[Node registry snapshots

http://infra.search.eagle-i.net:8081/nexus/content/repositories/snapshots/org/eagle-i/eagle-i-webapp-noderegistry/]

eagle-i-webapp-node-registry-[version].war

(coming soon)

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="4d36adb1-1799-423a-acf7-c58a8e3260fd"><ac:plain-text-body><![CDATA[

Central

Embeddable search bar

[Search bar releases

http://infra.search.eagle-i.net:8081/nexus/content/repositories/releases/org/eagle-i/eagle-i-searchbar/]

[Search bar snapshots

http://infra.search.eagle-i.net:8081/nexus/content/repositories/snapshots/org/eagle-i/eagle-i-searchbar/]

eagle-i-searchbar-[version].war

(coming soon)

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="0dd9e6ab-5a9f-47bc-b661-f4fd99a43c3b"><ac:plain-text-body><![CDATA[

Central 

Ontology browser webapp (optional)

[Ontology browser releases

http://infra.search.eagle-i.net:8081/nexus/content/repositories/releases/org/eagle-i/eagle-i-webapp-model/]

[Ontology browser snapshots

http://infra.search.eagle-i.net:8081/nexus/content/repositories/snapshots/org/eagle-i/eagle-i-webapp-model/]

eagle-i-webapp-model-[version].war 

[Application installation guide

SWEET and Institutional Search Installation and Upgrade Guide]

]]></ac:plain-text-body></ac:structured-macro>

Getting started: for developers

The fine print

Our code has a build and runtime dependency on Java 7

Get the code

The eagle-i source code is a multi-module maven project stored in a Subversion repository, see:  Subversion organization overview

Browse the Subversion repository:

Nicer interface:

https://open.med.harvard.edu/vvc/viewvc.cgi/eagle-i-dev/

Plain URL:

https://open.med.harvard.edu/svn/eagle-i-dev/

Check out the software development trunk:

svn co https://open.med.harvard.edu/svn/eagle-i-dev/apps/trunk

Build the entire project (note the extra memory, some of the tests are quite resource intensive)

cd eagle-i-base
mvn clean install -DargLine="-Xmx1G"

Check out a release of the software, e.g.:

svn co https://open.med.harvard.edu/svn/eagle-i-dev/apps/branches/1.5-MS3.x

Check out the data model development trunk:

svn co https://open.med.harvard.edu/svn/eagle-i-dev/datamodel/trunk

Check out a data model release, e.g.:

svn co https://open.med.harvard.edu/svn/eagle-i-dev/datamodel/releases/0.8.2

Set up a development environment

Our code is IDE-agnostic, though we've had a good experience using eclipse with the m2eclipse plugin (standard with the latest version of eclipse). The following guide outlines the procedure for setting this up:

Importing eagle-i code into Eclipse

Browse the Javadocs

Latest release

http://search.eagle-i.net/javadoc

Latest snapshot

http://qa.search.eagle-i.net/javadoc

Get the eagle-i resource ontology

http://code.google.com/p/eagle-i/

How are we doing?

Is there anything that could be clearer in our documentation? We welcome your questions and feedback. 

  • No labels