You are viewing an old version of this page. View the current version.

Compare with Current View Page History

« Previous Version 79 Next »

eagle-i software is available under a BSD 3 license.

Wonder Lake Software offers technical support and software engineering services to organizations wishing to integrate with, customize or extend the eagle-i platform.

Contents

NEW: Getting started: for system administrators, install in the Amazon Cloud

Follow instructions in this page: Installation, Upgrade and Administration of eagle-i in the Amazon Cloud

Getting started: for system administrators, install from packaged binaries

System requirements

The current eagle-i network deployment is a reference configuration. In this deployment, eagle-i nodes are VMs with the following configuration:

  • RAM: 6 GB
  • Disk: 100 GB
  • CPU: 2 core
  • Operating system: CentOS (previously Fedora 14)
  • Java environment: Sun JDK v. 1.7.0_17, 64 bit (Java 7 is a requirement. Other JDKs may work)
  • Servlet container: Tomcat 7
  • RDBMS: MySQL 5.1 (used for logging search usage)
  • Mail server: postfix (used to enable resource owner contact feature in Search pages)

In addition, the eagle-i network uses a central server for hosting the central search application and a few other central services. The configuration of the central server is similar to that of the institutional servers.

Download and install eagle-i software

To spin up an eagle-i node, you will need to download: Repository distribution, SWEET webapp, Online help webapp and optionally Institutional Search webapp

For detailed installation guides, see: Documentation

 

Component

Releases

Snapshots (daily builds)

What to download?

Installation/usage

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5d51800f-13ee-4ea4-a44a-fa6fc302a46d"><ac:plain-text-body><![CDATA[

Institution

Repository distribution

[Repository releases

http://infra.search.eagle-i.net:8081/nexus/content/repositories/releases/org/eagle-i/eagle-i-repository-dist/]

[Repository snapshots

http://infra.search.eagle-i.net:8081/nexus/content/repositories/snapshots/org/eagle-i/eagle-i-repository-dist/]

eagle-i-repository-dist-[version].zip

[Repository Administrator Guide

Repository Installation, Upgrade and Administration Guide]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="cb5ca82d-dc01-42b2-8993-1ee81a1585d9"><ac:plain-text-body><![CDATA[

Institution 

SWEET webapp

[SWEET releases

http://infra.search.eagle-i.net:8081/nexus/content/repositories/releases/org/eagle-i/eagle-i-webapp-sweet/]

[SWEET snapshots

http://infra.search.eagle-i.net:8081/nexus/content/repositories/snapshots/org/eagle-i/eagle-i-webapp-sweet/]

eagle-i-webapp-sweet-[version].war

[Application Installation guide

SWEET and Institutional Search Installation and Upgrade Guide]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="211bcdd7-9f5a-4cbe-8dc1-4014afdb59b0"><ac:plain-text-body><![CDATA[

Institution

Institutional search webapp

[Insitutional search releases

http://infra.search.eagle-i.net:8081/nexus/content/repositories/releases/org/eagle-i/eagle-i-webapp-institution/]

[Institutional search snapshots

http://infra.search.eagle-i.net:8081/nexus/content/repositories/snapshots/org/eagle-i/eagle-i-webapp-institution/]

eagle-i-webapp-institution-[version].war

[Application installation guide

SWEET and Institutional Search Installation and Upgrade Guide]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="fc07acd5-ba28-476e-83d3-b3f0479948d9"><ac:plain-text-body><![CDATA[

Institution

Online help webapp

[Help releases

http://infra.search.eagle-i.net:8081/nexus/content/repositories/releases/org/eagle-i/eagle-i-help/]

[Help snapshots

http://infra.search.eagle-i.net:8081/nexus/content/repositories/snapshots/org/eagle-i/eagle-i-help/]

eagle-i-help-[version].war

[Application installation guide

SWEET and Institutional Search Installation and Upgrade Guide]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d5341ea2-3a65-49d4-9f45-e51fb4d1865b"><ac:plain-text-body><![CDATA[

all

Data management toolkit

[Data management toolkit releases

http://infra.search.eagle-i.net:8081/nexus/content/repositories/releases/org/eagle-i/eagle-i-datatools-datamanagement/]

[Data management toolkit snapshots

http://infra.search.eagle-i.net:8081/nexus/content/repositories/snapshots/org/eagle-i/eagle-i-datatools-datamanagement/]

eagle-i-datatools-datamanagement-[version].jar

[Data Management Toolkit Guide

eaglei:Data Management Toolkit]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="9bf51a29-bc75-431c-ac55-af1593687a9d"><ac:plain-text-body><![CDATA[

all

SWIFT toolkit (ETL)

To be released (2.0MS3)

[SWIFT toolkit snapshots

http://infra.search.eagle-i.net:8081/nexus/content/repositories/snapshots/org/eagle-i/eagle-i-datatools-etl-dist/]

eagle-i-datatools-etl-dist-[version].jar

[SWIFT Toolkit Guide

eaglei:SWIFT]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="91f80ac7-6838-4c05-9b35-c6f101f54ad1"><ac:plain-text-body><![CDATA[

Central 

Central search webapp

[Central search releases

http://infra.search.eagle-i.net:8081/nexus/content/repositories/releases/org/eagle-i/eagle-i-webapp-central/]

[Central search snapshots

http://infra.search.eagle-i.net:8081/nexus/content/repositories/snapshots/org/eagle-i/eagle-i-webapp-central/]

eagle-i-webapp-central-[version].war

(coming soon)

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="b3e01c86-9a0c-48f9-9f73-489ae3cf6fb9"><ac:plain-text-body><![CDATA[

Central

Node registry

[Node registry releases

http://infra.search.eagle-i.net:8081/nexus/content/repositories/releases/org/eagle-i/eagle-i-webapp-noderegistry/]

[Node registry snapshots

http://infra.search.eagle-i.net:8081/nexus/content/repositories/snapshots/org/eagle-i/eagle-i-webapp-noderegistry/]

eagle-i-webapp-node-registry-[version].war

(coming soon)

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="cebd69c6-87c1-4a4c-860a-1f339783a230"><ac:plain-text-body><![CDATA[

Central

Embeddable search bar

[Search bar releases

http://infra.search.eagle-i.net:8081/nexus/content/repositories/releases/org/eagle-i/eagle-i-searchbar/]

[Search bar snapshots

http://infra.search.eagle-i.net:8081/nexus/content/repositories/snapshots/org/eagle-i/eagle-i-searchbar/]

eagle-i-searchbar-[version].war

(coming soon)

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="aa834b4f-f8ea-424b-b02c-2bc5c3827f26"><ac:plain-text-body><![CDATA[

Central 

Ontology browser webapp (optional)

[Ontology browser releases

http://infra.search.eagle-i.net:8081/nexus/content/repositories/releases/org/eagle-i/eagle-i-webapp-model/]

[Ontology browser snapshots

http://infra.search.eagle-i.net:8081/nexus/content/repositories/snapshots/org/eagle-i/eagle-i-webapp-model/]

eagle-i-webapp-model-[version].war 

[Application installation guide

SWEET and Institutional Search Installation and Upgrade Guide]

]]></ac:plain-text-body></ac:structured-macro>

Getting started: for developers

The fine print

Our code has a build and runtime dependency on Java 7

Get the code

The eagle-i source code is a multi-module maven project stored in a Subversion repository, see:  Subversion organization overview

Browse the Subversion repository:

Nicer interface:

https://open.med.harvard.edu/vvc/viewvc.cgi/eagle-i-dev/

Plain URL:

https://open.med.harvard.edu/svn/eagle-i-dev/

Check out the software development trunk:

svn co https://open.med.harvard.edu/svn/eagle-i-dev/apps/trunk

Build the entire project (note the extra memory, some of the tests are quite resource intensive)

cd eagle-i-base
mvn clean install -DargLine="-Xmx1G"

Check out a release of the software, e.g.:

svn co https://open.med.harvard.edu/svn/eagle-i-dev/apps/branches/1.5-MS3.x

Check out the data model development trunk:

svn co https://open.med.harvard.edu/svn/eagle-i-dev/datamodel/trunk

Check out a data model release, e.g.:

svn co https://open.med.harvard.edu/svn/eagle-i-dev/datamodel/releases/0.8.2

Set up a development environment

Our code is IDE-agnostic, though we've had a good experience using eclipse with the m2eclipse plugin (standard with the latest version of eclipse). The following guide outlines the procedure for setting this up:

Importing eagle-i code into Eclipse

Browse the Javadocs

Latest release

http://search.eagle-i.net/javadoc

Latest snapshot

http://qa.search.eagle-i.net/javadoc

Get the eagle-i resource ontology

http://code.google.com/p/eagle-i/

How are we doing?

Is there anything that could be clearer in our documentation? We welcome your questions and feedback

  • No labels