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- Open SmartSVN. The files you will be working with are located here:
svn+ssh://orchestra.med.harvard.edu/svn/cbmi/u24/eagle-i-dev/datamodel/trunk/src/ontology
- Click Update to update the entire trunk.
This step updates three files, ids.xlsx, ero.owl
and eagle-i-app.owl
, as well as all relevant imports.
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- Enter the following information in each column:
Column A
ERO ID #Column B
MireotColumn C
LabelColumn D
TypeColumn E
URIChoose the next consecutive number
Nothing
Enter the name of the term
Typ Class
Choose the next consecutive number
- Save the file, but leave the spreadsheet open, you'll come back to retrieve the ERO ID#.
- Open Protégé. Open the OWL ontology. Choose the file, eagle-app.owl from your directory. For example:
/Users/JaneCurator/eagle-i-datamodel/trunk/src/ontology/eagle-i-app.owl.
- From the Active Ontology tab, click Classes.
- The default file that opens is eagle-i-app.owl, use the drop-down menu to change the file to the ero file.
- If you don't see the parent term, use the search box in the upper-left corner of the screen. In this example, the parent term is technique. Once you find the parent term, highlight the correct class and then click Subclass to add a subclass.
- When the dialog box, Create a new Owl Class, appears copy and paste the ERO ID (from Column A in the Excel spreadsheet) into the text box: "Please enter a class name". Click OK.
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- Click to change the label for the new term you just added. Highlight the existing label and replace the ERO_xxxx ID (from the Excel spreadsheet) with the name of the term.
All labels MUST be in lowercase and every annotation must be a datatype, String. - To change the datatype, choose String from the Type drop-down list at the bottom of the Annotation box. Click OK.
- Choose a definition from the list of annotation properties. The definition must be IAO (Information Artifacts Ontology); hover over the definition to make sure. If necessary, you can add an alternate term. Click to add a new annotation. Again, make sure the type is STRING. Click OK.
- Add two annotation values: definition editor and definition source: Click (add new annotation) and select definition editor from the annotation properties list and type your name using the format: PERSON: First name Last name. Click OK.
- Click again, and select definition source.
- Copy and paste the definition source. Make sure the type is STRING. Click OK.
- Save the term. Click Save and hover over the term to confirm it has a valid URI.
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