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./generate-inputs.sh -t typeURI

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• You may obtain the type URI from the eagle-i ontology browser . Use the left bar to find the most specific type you need, select it and grab its URI, e.g. http://purl.obolibrary.org/obo/ERO_0000229 for Monoclonal Antibodies.
   

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./ETLer.sh -d dataDirectory [-p DRAFT|CURATION|PUBLISH] -c username:password -r repositoryURL -eid property-uri

 

• Use this command if  the input file represents resources that have been previously uploaded or created in eagle-i

• The value of the -eid parameter (external identifier) is the URI of a property that uniquely identifies the resource outside eagle-i. This property will be used to match the input to a resource in the eagle-i repository. Grab the property URI from the ontology browser (expand the property name). Example properties are: 

  • Catalog number, -eid http://purl.obolibrary.org/obo/ERO_0001528
  • Inventory number, -eid http://purl.obolibrary.org/obo/ERO_0000044
  • RDFS label, use the shorthand syntax -eid label
• If the ETL process finds a matching resource, it will replace all its properties with the values from the input file; the URI of the matched resource will be preserved.
• If the ETL process does not find a matching resource, a new resource will be created.
• The value of the -p parameter indicates the desired workflow state for newly created resources. Existing resources will retain their workflow state.

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