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• an ETLer -  command line program that executes a bulk upload
• a deETLer - command line program that deletes a previous ETL upload
• A bulk workflow - command line program that executes workflow transitions on groups of records, e.g. Publish, Return to curation, Withdraw
• an ETL Input Generator - command line program that allows system administrators to generate spreadsheet templates and map files for the various resource types of the eagle-i resource ontology (e.g. a template/map for antibodies, for instruments, etc.)

Prerequistes

The SWIFT Toolkit requires:

• A Unix-like environment including a terminal for executing commands
  • MacOS and Linux users don't need to install anything extra. For MacOS, use the Terminal app under Applications/Utilities
  • cygwin is recommended for Windows users
• A Java 1.7 runtime environment
  • execute the command {{ java -- version}} to find out what version you have. 
  • If necessary, you may download the JRE directly from Oracle and follow the installation instructions.

Download

The SWIFT toolkit is packaged as a zip file, and can be downloaded from our our software repository. 

Download the SWIFT toolkit distribution  {{eagle-i-datatools-swift-\[version\]-dist.zip}}, unzip it into a dedicated directory, and navigate to it. For example

mkdir ~/eagle-i
unzip -d ~/eagle-i eagle-i-datatools-swift-2.0MS3.01-dist.zip
cd swift-2.0MS3.01

Prerequistes

The SWIFT Toolkit requires:

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• MacOS and Linux users don't need to install anything extra. For MacOS, use the Terminal app under Applications/Utilities
• cygwin is recommended for Windows users

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Input generation instructions

To generate etl templates and maps, navigate to the dedicated directory (above) and run the script:

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