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The SWIFT toolkit is packaged as an executable jar, and can be downloaded from our software repository. We have also manually packaged a zip file that contains shell scripts to wrap the main commands and a few pre-generated templates and maps (currently only for version 1.7MS1.01.ziponly for the most recently released eagle-i software and ontology versions); the following is a temporary location, while we integrate the generation of this package into our build processes:

https://open.med.harvard.edu/svn/eagle-i-dev/apps/trunk/dev-resources/

Download the SWIFT toolkit distribution {{eagle-i-etl-dist-

\[version\].zip}}, unzip it into a dedicated directory, and navigate to it, for example

mkdir ~/eagle-i
unzip -d ~/eagle-i eagle-i-etl-dist-1.7MS2.01.zip
cd eagle-i/eagle-i-etl-dist-1.7M2.01

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