Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

  • apps: the code for the different software components and the artifacts to compile them.
  • datamodel: artifacts for generating the ontology files (owl) and artifacts for packaging them eagle-i ontology and packaging it into a jar. Note that the pure ontology portion is mirrored at http://code.google.com/p/eagle-i/directories were most *.owl reside are pulled in as externals, so they won't be visible with the above links (you'll need to checkout the tree to see all directories).

apps

  • trunk - contains the active development of the different software components.
  • branches - contains the releases of the software.

Directory

Description


common

Miscellaneous Java services and utilities used by search and data tools applications. Includes: Solr index, auto-suggest, authentication and connection, logging, Jira connector for feedback,... |

configurationSample configuration files, configuration files used in AWS installer

common/ui

Front-end GWT code shared by search and data tools applications (SWEET and data management);
static resources shared by all webapps (used as maven overlay).

datatools

Shared back-end code for read/write operations on an eagle-i repository;
ETL code for generating eagle-i resource descriptions from excel and XML;
Data management command line tools for performing bulk changes to an eagle-i dataset;
SWEET front-end GWT code.

dev-resources

Resources for developers, such as eclipse configuration files.

documentation

Documentation, including online user help (note: does not yet contain admin and developers guides found in this website).

examples

Sample code and configuration files.

model

Abstraction for interacting with an eagle-i annotated ontology, optimized for access from client code (API and Jena-based implementation).

nlp

Experiments with LingPipe for extracting eagle-i top-level resources from PubMed abstracts.

reference-implementations

Code that is no longer active in the main codebase but is helpful as reference.

repository

Repository code and administrative tools. This directory is pretty much self-contained (except for its dependency on common/ui/static-resources).

search

Search application back-end.

webapp

User-facing web applications and web services except for repository. The modules in this directory produce .war files.

 

datamodel

  • trunk - contains the active development of the ontology.
  • releases - contains the releases of the ontology.

Directory

Description


ontology

The owl files that conform the eagle-i resource ontology, including imports (pulled in via svn:externals). This directory also contains the main application ontology (eagle-iero-app.owl)

tools

The maven files to build the ontology jar and miscellaneous application-level administrative ontologies.