David Walend | 79eae12eb4c | Test for optional parts for SHRINE-1521 | | |
David Walend | 723ee0f6513 | Reworked how the dashboard gets optional parts for SHRINE-1521 | | |
David Walend | 2e901403b86 | Added test and some cleanup for SHRINE-1520 | | |
David Walend | 9dc9a949d36 | A try at replacing happy with status for getting a summary for SHRINE-1520 | | |
David Walend | 2e1505a18af | More cleanup for SHRINE-1495 | | |
David Walend | de257c0aaed | More cleanup for SHRINE-1495 | | |
David Walend | 691529b5f34 | More cleanup for SHRINE-1495 | | |
David Walend | 141f192c69f | Start of SHRINE-1495 | | |
David Walend | 7a5d971bf89 | Merge remote-tracking branch 'origin/hotfix/1.21.1' into develop | | |
Ansible Deploy | 5d5f9fafee7 | Merge release branch hotfix/1.21.1 into master. | | |
Ansible Deploy | 57f2b95c5a3 | Update POMs with release version 1.21.1. | | |
Keith Dwyer | f0627b8a9c1 | increment pom.xml to 1.21.1-SNAPSHOT | | |
Keith Dwyer | 463c3fc6ef8 | Merge branch 'hotfix/1.21.1' into develop | | |
Keith Dwyer | f6ce94b4b41 | [webclient] revert default urlProxy to shrine-proxy | | |
David Walend | 68a1d67e0ec | Merge branch 'develop' of https://open.med.harvard.edu/stash/scm/shrine/shrine into develop | | |
David Walend | 161ebb92aec | Separated most of the QEP components from ShrineOrchestrator, and found and fixed a long-time sporatic bug, while wor... | | |
Ansible Deploy | edcaf82f9e2 | Merge release branch release/1.21.0 into master. | | |
Ansible Deploy | 6779dd2d3eb | Update POMs with release version 1.21.0. | | |
Keith Dwyer | 82286d46b33 | Merge branch 'release/1.21.0' into develop | | |
David Walend | 879a94e26d7 | Moved out many hub-related things for SHRINE-1041 | | |
Keith Dwyer | 73097831e65 | [webclient] add updated webclient help PDF | | |
David Walend | 2873a8f5eaf | Merge branch 'release/1.21.0' into develop | | |
David Walend | bde71070bac | Another try at getting better text for SHRINE-1484 | | |
David Walend | 9d892c17739 | Another try at getting better text for SHRINE-1484 | | |
David Walend | 7c651ea77a8 | Another try at getting better text for SHRINE-1484 | | |
David Walend | 39d318d64c7 | Another try at better text for SHRINE-1484 | | |
David Walend | 4fdbbf7cb71 | Another try at better text for SHRINE-1484 | | |
David Walend | 9bb9098238d | Trying for better text in SHRINE-1484 | | |
David Walend | c63e2c788d4 | See if I get a better message for SHRINE-1484 | | |
David Walend | 564564fe16d | Removing logging to learn about SHRINE-1492 | | |
David Walend | b9fc8bc1b2e | Probing to learn what for SHRINE-1492 is about | | |
David Walend | 03aabc24b26 | Possible hack for SHRINE-1484 | | |
David Walend | cef5ed0ad33 | Separated AdapterComponents into its own class off in the adapter package for SHRINE-1041 | | |
David Walend | 117a696a7ec | Merge branch 'release/1.21.0' into develop | | |
David Walend | 95b4437cae5 | Got rid of AdapterConfig for SHRINE-1041 | | |
David Walend | e627a2d339d | Decomplexifying the adapter by pushing 80 lines of config into AdapterComponents' apply method for SHRINE-1041 | | |
David Walend | 25e100e900e | Revert "Pulled a lot of the adapter init into AdapterComponents.apply() for SHRINE-1041"
This reverts commit f66199c... | | |
dwalend | b8b041aeba1 | Comment for a future step of SHRINE-1041 | | |
David Walend | f66199c37bb | Pulled a lot of the adapter init into AdapterComponents.apply() for SHRINE-1041 | | |
Keith Dwyer | f04178162d5 | [Webclient] Merge in dev-shrine-webclient v1.7.07-SHRINE-4 | | |
David Walend | 33e3d48dc1e | HappyShrineService now shows what is actually in use in ShrineOrchestrator | | |
David Walend | ac5958d42f2 | Moved inner classes out to fix URL for SHRINE-1491 | | |
David Walend | eb38787e838 | Inverting dependency of Happy for SHRINE-1449 | | |
David Walend | 257d0fa4930 | Removed config and broadcaster from Happy for SHRINE-1449 | | |
David Walend | 3dd1ff0647b | updated comment | | |
David Walend | 6ef4059f387 | Got rid of HubConfig and HubConfigTest for SHRINE-1041 | | |
David Walend | 80a5e35ddac | Got rid of ShrineConfig and ShrineCinfigTest for SHRINE-1041 | | |
David Walend | 13454ac4eea | Removed adapterStatusQuery | | |
Keith Dwyer | c46ed1838f1 | [shrine-webclient] merging 3rd set of changes from Nich | | |
David Walend | 392a13bf1d7 | Added URL to AdapterClient | | |
David Walend | 48c6a24799f | moving hub parts closer together | | |
David Walend | 2ce53112c03 | First pass through the hubConfig for SHRINE-1041 | | |
David Walend | f0cb8f1ade7 | Removed QepConfig and associated baggage for SHRINE-1041 | | |
David Walend | 37b9f97de0e | Moved a lot of goop from ShrineOrchestrator to SigningBroadcastAndAggregationService for SHRINE-1041 | | |
David Walend | dbc01501aeb | Got rid of makePoster extra layer and untangled QEP construction when on the same node as the hub. SHRINE-1041 | | |
David Walend | ff3e7ef4ea3 | Dissolved makeHttpClient for SHRINE-1041 | | |
David Walend | 12e53983e2e | Removed authenticationType from ShrineOrchestrator for SHRINE-1041 | | |
David Walend | c5755db7174 | Pinned down AuthorizationType for SHRINE-1041 | | |
David Walend | 44eebba9827 | Dissolved a lot of AuthStrategy for SHRINE-1041 | | |
David Walend | 2576f473582 | Big cleanup of DSA authorizer for SHRINE-1041 | | |
David Walend | b8902ceed5a | Fixing indent for SHRINE-1041 | | |
David Walend | 031efefe1ec | Untangled some of the mess around QueryEntryPointComponents for SHRINE-1041 | | |
David Walend | 5dd2f229083 | Worked through mixed concerns in the hub and qep configs for SHRINE-1041 | | |
David Walend | 95fea9d7c69 | Pushing a QEP config through to AuthStrategy for SHRINE-1041 | | |
David Walend | 816b51c44b7 | Merged web client from release/1.21.0 | | |
David Walend | 461ac3a5d06 | Moved hiveCredentials out of ShrineConf for SHRINE-1042 | | |
Keith Dwyer | bec05a6519a | [shrine-webclient] revert changes to SHRINE cell's cell_config_data.js | | |
Keith Dwyer | b8cb9bca86e | [shrine-webclient] merge in v1.7.07-SHRINE-2 tag of dev-shrine-webclient | | |
David Walend | d4292ac1cc1 | Merge branch 'release/1.21.0' into develop | | |
David Walend | c22c7c23d6c | Merge branch 'develop' of https://open.med.harvard.edu/stash/scm/shrine/shrine into develop | | |
David Walend | 0edc7f38785 | Untangled hub.shouldQuerySelf for SHRINE-1041 | | |
Keith Dwyer | f2a333a24b7 | [steward] remove localhost check from model-service.js (based on variant used in https://open.med.harvard.edu/stash/p... | | |
Keith Dwyer | 85ab8ee5334 | Fix syntax errors in adapter.sql (for ERROR_RESULT table) | | |
David Walend | 9da3c176c52 | Fix to happy service while working on SHRINE-1041 | | |
David Walend | 51d2496f3dc | fix for SHRINE-1418 bower gets too picky about names | | |
David Walend | 9b119c94f41 | fix for SHRINE-1418 bower gets too picky about names | | |
David Walend | 48ce9ac0211 | Hopefully a fix for our incompatibility with bower 1.7.8 | | |
Keith Dwyer | 254038708f5 | Fix syntax errors in adapter.sql (for ERROR_RESULT table) | | |
David Walend | 198e5da61e7 | Pulled out CRC Hive Credentials from ShrineConfig for SHRINE-1041 | | |
David Walend | 2bcb8547266 | A little less dependency on AdapaterConfig. | | |
David Walend | 147f98ddb2b | breakdownResultOutputTypes for SHRINE-1041 | | |
David Walend | 9d6266b359e | squyrrlyl database type, and pm and ont endpoints for SHRINE-1041 | | |
David Walend | 8017e8a88a3 | More SHRINE-1041 . Pulled out the keystoreDescriptor. | | |
David Walend | f3a2c07d38c | Started replacing the ShrineConfig class with config.getConfig(shrine) for SHRINE-1041 | | |
David Walend | 87dd8dab048 | Renaming ManuallyWiredShrineOctopus to ShrineOrchistrator for SHRINE-1041 | | |
David Walend | e0bf0ff6404 | ErrorResponse for SHRINE-1394 | | |
David Walend | e9edbb89f39 | Log cleanup from SHRINE-1394 | | |
David Walend | bbbd9392797 | Maybe the righ xml for a ReadQueryDefinitionResponse, part of SHRINE-1394 | | |
David Walend | 521e6417e83 | Now checking the cache in doReadQueryDefinition(). Possible fix for SHRINE-1394. | | |
David Walend | 408dec668ef | Now logging problems when first creating an ErrorResponse. Fix for SHRINE-1409. | | |
David Walend | e5cea54eed0 | Now logging problems when first creating an ErrorResponse | | |
David Walend | 963eb3d73c3 | Last of the fixes for SHRINE-1113 updated all the test code and removed the old method, plus a 1.22 fix for SHRINE-1409 | | |
David Walend | eee398843d7 | More SHRINE-1113. Switched to new API in I2b2BroadcastResource | | |
David Walend | 51ba4ab5361 | Another step toward SHRINE-1113 | | |
Keith Dwyer | 68337afb5bf | [shrine-webclient] cherrypick changes made by Ben between 1.20.1 and 1.21.0 into new i2b2 webclient | | |
Keith Dwyer | 50cbf525567 | [shrine-webclient] change default domain in i2b2_config_data.js | | |
Keith Dwyer | 0e73872ba51 | bring in SHRINE-ified i2b2 1.7.07 webclient (and genericised config URLs) | | |
David Walend | 0d1ed0f4b64 | Proper problem for TimedOutWithAdapter, part of SHRINE-1113 | | |
David Walend | 96aa44ba6e1 | Proper problem for TimedOutWithAdapter, part of SHRINE-1113 | | |
David Walend | dae66ba237b | More SHRINE-1113 three more Errors have real problems instead of strings. | | |
David Walend | a7c81c84039 | Merge branch 'release/1.21.0' into develop | | |
David Walend | d0fe8abcc12 | Possible fix for SHRINE-1374 - happy's xml should come back with an empty notAHub element for non-hub nodes, no such ... | | |
David Walend | 3b88331b487 | Logging to figure out SHRINE-1374 | | |
David Walend | 495e4ea71f9 | Possible fix for SHRINE-1325 - URL value for the network hub box in the QEP section is now in the config | | |
David Walend | 39b79367770 | Merge branch 'release/1.21.0' into develop | | |
David Walend | 23c410f3c6d | Missing database statements for SHRINE-1388 | | |
David Walend | b44ba66753e | Merge branch 'release/1.21.0' into develop | | |
David Walend | 6876058f420 | Attempted fix of SHRINE-1383 . Adding a field to the wierdly limited shrine conf being sent to the dashboard. | | |
David Walend | a150561c40c | Attempt to fix SHRINE-1383 , use the networkStatusQuery term from the config file. | | |
David Walend | e6a987d5692 | Fix for SHRINE-1366 . Allow access to the happy service from anywhere. | | |
David Walend | 3917f168243 | Merge branch 'release/1.21.0' into develop | | |
David Walend | f146bb0dafa | Possible fix for SHRINE-1388 | | |
David Walend | eb668c28e49 | Removed logging for SHRINE-1377 | | |
David Walend | 18ee728afe6 | Updated mssql and oracle qep audit schemas for SHRINE-1377 | | |
David Walend | 3a20bb0b9ad | Making the ResultOutputType optional. More hope for SHRINE-1377 | | |
David Walend | 6bfec45d6a4 | Some understanding and maybe a fix for SHRINE-1377 | | |
David Walend | 2f9190722c4 | Added some logging to see what is going on | | |
David Walend | 6c50f60966d | Possibly a fix for SHRINE-1377 - QueryResults with ERRORs don't have result types in I2B2 | | |
David Walend | 6cbb20c1923 | Added sorting to selectPreviousQueriesByUserAndDomain() to pick most recent queries. Possible fix for SHRINE-1372 | | |
David Walend | 0d2c384ab68 | Merge release branch | | |
David Walend | 61f092d54be | Merging 1.20.1 fix | | |
David Walend | 94c104a3165 | Updated a dashboard test, then commented it out. Needs VPN to work | | |
David Walend | 82b00fbbce9 | Merging 1.20.1 changes | | |
David Walend | 167d0df8cf6 | Overloaded toString in KeyStoreDescriptor to redact the password for SHRINE-1371 | | |
David Walend | 7f86d1af75e | Added ErrorStatusFromDataStewardApp for SHRINE-1113 | | |
David Walend | 83394472a98 | HeldQueries.scala now uses a QueryNotFound problem for SHRINE-1113 | | |
David Walend | 1c8e3352366 | Added UnknownRequestType for SHRINE-1113 | | |
David Walend | 4fb25739591 | Using real problems in AbstractReadQueryResultAdapter.scala for SHRINE-1113 | | |
David Walend | 4ea6697aeb3 | Removed hasBeenRun from ShrineQuery | | |
David Walend | 3d57ca1786f | Removed held field from QueryMaster. | | |
David Walend | 7d8d063a811 | More updates | | |
David Walend | 6e12bca8d57 | Upgrade to scala 2.11.8 | | |
David Walend | a00271d764c | Updated spring library | | |
David Walend | 5457844e556 | Moved to 1.22.0-SNAPSHOT | | |
David Walend | f769de87b13 | Added a trap for SqlExceptions coming from the QEP's database. | | |
David Walend | f145827ebd5 | Added new problem response for trouble running a query in the qep | | |
David Walend | 5a23d74b039 | Added some unix-style usage, cleaned up what shows up on std.out | | |
David Walend | e361f941f69 | VARCHAR(MAX) replaces TEXT in mssql | | |
David Walend | 0885c7b7e17 | Merge branch 'develop' of https://open.med.harvard.edu/stash/scm/shrine/shrine into develop | | |
David Walend | 8ba321c3dde | Fixes for Oracle schema | | |
Keith Dwyer | d2c81717f78 | [webclient] set wikiBaseUrl to a sensible default | | |
David Walend | f253511819a | Added configurable timeout for the qep's communication with the qep db cache | | |
David Walend | 3ab85ca84ae | Fix for SHRINE-1327 - now handles a bad slick driver for microsoft | | |
David Walend | 50331b3f995 | Put in some safty features to avoid trouble if someone runs the tool twice, and some printlns to tell them what is go... | | |
David Walend | b6f766a02eb | Now transferring data between databases on shrine-dev | | |
David Walend | 9f495e94cc8 | Now getting data out of squyrrllle | | |
David Walend | 5cdf4374ebe | Loading the local config and shrine.conf in the tool | | |
David Walend | 35991961cc8 | Password handling for the data source creator | | |
David Walend | 5648e6caae5 | Bulk of the code for priming the previous queries table | | |
David Walend | 95116f8b62e | Logging an exception instead of dumping it to the console | | |
David Walend | 39f39634af1 | Now loading the config | | |
David Walend | 48195dd4e76 | Got a hello from a .zip file | | |
David Walend | b3e11af4b67 | lockout privleged user threshold can be null in the database, will use the default threshold defined in shrine.conf. | | |
David Walend | 7f8d6c2a443 | Made threshold optional (in code to see what breaks on shrine-dev) | | |
David Walend | b4ec1b02dc2 | Interpretting fetchSize as an SQL limit for SHRINE-1309 | | |
David Walend | d169d3654ae | Interpretting fetchSize as an SQL limit for SHRINE-1309 | | |
David Walend | d0726394537 | Removed the hack to get auth errors | | |
David Walend | 1c3ea56d142 | Added a NotAuthenticatedProblem to report problems with authentication that bubble up from deep inside the QEP where ... | | |
David Walend | 81211412c35 | Hack to get an exception from the QEP | | |
David Walend | bedefc0f621 | Now authenticating everythign that happens in the QepService and AbstractQepService. | | |
David Walend | 4e5cd767852 | Added some possbily better explanation of the error for SHRINE-1285 | | |
David Walend | cf1ae4c6d5b | First try at oracle and msssql ddls for the new tables in the qep. | | |
David Walend | b221316402f | Try putting the property into the .war file's reference.conf | | |
David Walend | e4ca26a5b2d | See if the shrine servlet picks up the setting from the reference.conf | | |
David Walend | 87af747198f | Got rid of ResultOutputType.PATIENTSET | | |
David Walend | 9b302f58581 | Added support for configured breakdown types | | |
David Walend | 2bf0f425c61 | Better error message for SHRINE-1299 | | |
David Walend | 29820016199 | Added logging of the response | | |
David Walend | 533628928d5 | Better exception message for an IOException from Keystore trouble | | |
David Walend | 55ca127e0a5 | Try out default happy and status as https at 6443 | | |
David Walend | 3996ee1ec6a | A little cleanup before dealing with sorting and fetch size | | |
Ben Carmen | e6f4757a1de | fix of title. | | |
Ben Carmen | 652129a4afd | fix of not showing hub info when downstream node in summary. | | |
Ben Carmen | 8f6c8f57b54 | Merge remote-tracking branch 'origin/develop' into develop | | |
Ben Carmen | c20d41dd42a | fix of adapter ok. | | |
David Walend | ff5a1baf4ea | Need to update the times to pick up the delete | | |
David Walend | 6d6266de1dc | Merge branch 'develop' of https://open.med.harvard.edu/stash/scm/shrine/shrine into develop | | |
David Walend | 9f94c89c886 | Plugging in method to delete queries | | |
Ben Carmen | b7b50ae410e | Merge remote-tracking branch 'origin/develop' into develop | | |
Ben Carmen | 3f620351fa6 | Commit of latest UI. | | |
David Walend | 2a667d9c0f9 | Merge branch 'develop' of https://open.med.harvard.edu/stash/scm/shrine/shrine into develop | | |
David Walend | 3f85e99a94a | Support for renaming and deleting queries | | |
Ben Carmen | e0a957393a8 | Merge remote-tracking branch 'origin/develop' into develop | | |
Ben Carmen | f9a318de5dc | Latest fix for dashboard. | | |
David Walend | 73feda32aca | Renaming before using in the db code | | |
Ben Carmen | b144c7f45a7 | Merge remote-tracking branch 'origin/develop' into develop | | |
Ben Carmen | 0d26610663a | update of summary view. | | |
Ben Carmen | 8c2087fd814 | Fix of adapter, keystore and config. Ready to test | | |
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