 Ben C | ac4503f43a8 | edited readme | | |
 Ben Carmen | 31ce95ccbfc | Merge pull request #476 in SHRINE/shrine from bugfix/SHRINE-3270-fix-missing-flagged-message to release/1.26.6
* com... | | |
Ben Carmen | f811bc212e3 | Merge pull request #477 in SHRINE/shrine from bugfix/SHRINE-3347-fix-highlighting to release/1.26.6
* commit '8ae1ab... | | |
Ben C | 682b7142439 | added readme, tweaked scripts and linter | | |
 David Walend | 7da4290e2af | Updated http4s to the latest (M7) for SHRINE-3346 | | |
 marc-danie | bb8478506c1 | SHRINE-3344 - Replace blocking unsafeRunSync calls in QepService.scala with proper IOs - switched to using Log instea... | | |
Ben C | 8ae1ab223e2 | possible fix of highlighting issue | | |
marc-danie | 023952c4e57 | SHRINE-3344 - Replace blocking unsafeRunSync calls in QepService.scala with proper IOs - removed commented out code | | |
Ben C | 9f1aab79cd7 | message field is now flagMessage | | |
Ben C | 7021c09fb22 | Fixed version numbers in POMs | | |
marc-danie | 20fd16afc51 | SHRINE-3344 - Replace blocking unsafeRunSync calls in QepService.scala with proper IOs - removed unused function | | |
Ben C | 48c978ebc25 | Update of starter snapshot test | | |
Ben C | 4714829ad03 | Updated shrine-api-war POM to execute against version 2 of the Webclient | | |
marc-danie | 26957843139 | Merge branch 'release/1.26.6' of https://open.med.harvard.edu/stash/scm/shrine/shrine into bugfix/SHRINE-3344-replace... | | |
marc-danie | a0122a5035c | SHRINE-3339 - Add missing result status HUB_WILL_SUBMIT - moved status to correct place | | |
Ben C | 8923e83f4c6 | created local dev environment | | |
David Walend | 465be7303c9 | Updated pom.xml version to 1.26.6.2-SNAPSHOT | | |
David Walend | b9f2f9046ec | Updated pom.xml versions to 1.26.7.1-SNAPSHOT | | |
Ben C | 2464fdaab18 | Added transforms for testing with Jest. | | |
Ben C | 41e43fc5d18 | pushing changes for production build | | |
Ben C | 1974e573e3f | Merge branch 'develop' into 2.0-webclient | | |
David Walend | 44adbf827a5 | Merge pull request #474 in SHRINE/shrine from bugfix/SHRINE-3345-lost-fork-join-pool-thread-envelope to develop
* co... | | |
David Walend | 7f38618834e | Unused import for SHRINE-3345 | | |
David Walend | 2e0b8db0e57 | Added lots of blocking for SHRINE-3345 | | |
Ben Carmen | 9342f66af66 | Merge pull request #473 in SHRINE/shrine from swap-long-polling2 to develop
* commit 'd5cda38ecb474821e3ba0bcb0eb635... | | |
bendcarmen | d5cda38ecb4 | swapped polling API | | |
bendcarmen | 1d83a63e476 | removal of test comment | | |
bendcarmen | 0b989b18a2e | Revert "Swap of polling api call"
This reverts commit fef0571ef0273226af5945490688495b8524b730. | | |
bendcarmen | fef0571ef02 | Swap of polling api call | | |
bendcarmen | bbf9b6caafc | refactor | | |
bendcarmen | 7998caaa9e6 | Merge branch 'develop' into 2.0-webclient-SNAPSHOT | | |
bendcarmen | 24344cb7408 | testing git mapping between 1.0 and 2.0 | | |
bendcarmen | beeac04ee17 | refactor | | |
bendcarmen | 1603a02bdc6 | refactor | | |
bendcarmen | c012099a2c7 | changed deprecated to version1 | | |
bendcarmen | 54ccb902ace | moved deprecated items | | |
bendcarmen | 00da619b28c | changed directory name of 1.0 shrine-webclient from shrine-webclient to shrine-webclient-1.0 | | |
bendcarmen | 71139385646 | Merge branch 'develop' into 2.0-webclient-SNAPSHOT | | |
bendcarmen | 7569dfbda0a | Changed pom to 2.0-webclient-SNAPSHOT | | |
David Walend | 6de4fa95554 | Merge pull request #471 in SHRINE/shrine from bugfix/SHRINE-3343-hack-to-fix-the-thread-pool-leak to develop
* commi... | | |
 dwalend | 4a3a72c7ed9 | Hack to fix a thread pool leak in SHRINE-3343 | | |
Ben Carmen | 1333fb67d9d | Merge pull request #469 in SHRINE/shrine from feature/SHRINE-3338-set-default-number to develop
* commit '8a2ceedf45... | | |
David Walend | 3c81cc7e10e | Merge pull request #470 in SHRINE/shrine from bugfix/SHRINE-3341-long-poll-not-being-triggered to develop
* commit '... | | |
bendcarmen | 8a2ceedf458 | Added the defaultNumberOfOntologyChildren to the static service. | | |
David Walend | 9dc4b01c3a3 | Trailing todo cleanup | | |
David Walend | 30ebaef8b8e | Added calls to the notification triggers for SHRINE-3341, which helps new results arrive in the UI | | |
 Marc-Danie Nazaire | 8be0ffa6d5b | Merge pull request #468 in SHRINE/shrine from bugfix/SHRINE-3339-add-missing-result-status-hub_will_submit to develop... | | |
bendcarmen | 4b741c60317 | Added 10000 as a default value for the Ontology children setting. | | |
Ben Carmen | bf1d00743cd | Merge pull request #467 in SHRINE/shrine from bugfix/SHRINE-3302-flickering-flag-unflag to develop
* commit 'c5c5497... | | |
marc-danie | 6a7f2713522 | SHRINE-3339 - Add missing result status HUB_WILL_SUBMIT - moved status to correct place | | |
marc-danie | 158cdace6c4 | SHRINE-3339 - Add missing result status HUB_WILL_SUBMIT - added new status to statuses list | | |
marc-danie | 65a6a1ab9f5 | SHRINE-3339 - Add missing result status HUB_WILL_SUBMIT - minor edit | | |
marc-danie | 85e8ad1b7c6 | SHRINE-3339 - Add missing result status HUB_WILL_SUBMIT | | |
bendcarmen | c5c54974c1f | Fix for flickering of flagging and query name pencil icons when loading. | | |
Ben Carmen | 27caaa1dc66 | Merge pull request #466 in SHRINE/shrine from bugfix/SHRINE-3275-problem-summary to develop
* commit 'f136925915898a... | | |
bendcarmen | f1369259158 | Fix of broken unit tests. | | |
David Walend | 65d97dbedcc | Merge pull request #465 in SHRINE/shrine from bugfix/SHRINE-3332-on-shrine-qa2-query-6284097453461604792 to develop
... | | |
David Walend | 5ed357d8c2d | Merge pull request #464 in SHRINE/shrine from bugfix/SHRINE-3333-on-shrine-qa3-8929854896815858575 to develop
* comm... | | |
David Walend | 5d756edc405 | Merge pull request #463 in SHRINE/shrine from feature/SHRINE-3336-try-an-isolated-scale-up-test to develop
* commit ... | | |
bendcarmen | 9deea2ee6da | Use the summary and description text of the problem digest. | | |
David Walend | 0827631d412 | Smoothing out some extra calls to the CRC for SHRINE-3332, and making sure the CRC always gets asked about QUEUED que... | | |
Marc-Danie Nazaire | d1ec18253fe | Merge pull request #433 in SHRINE/shrine from feature/SHRINE-3305-remove-the-shrine-proxy-project to develop
* commi... | | |
David Walend | d4aa0839fac | Handling some unrecorded errors for QUEUED queries for SHRINE-3333 | | |
David Walend | 5efa74d07d5 | Some testing jigs I made for SHRINE-3336 that I'd like to keep around | | |
David Walend | 45f4c0170b3 | Merge pull request #461 in SHRINE/shrine from bugfix/SHRINE-2926-check-for-xml-injection-in-shrine-s to develop
* co... | | |
David Walend | 3da9407c994 | Merge pull request #460 in SHRINE/shrine from feature/SHRINE-3149-interpret-reinterpret-status to develop
* commit '... | | |
Ben Carmen | 3c6b91f04fc | Merge pull request #462 in SHRINE/shrine from feature/SHRINE-3174-bold-updated-queries to develop
* commit '3696b05b... | | |
Ben Carmen | 2bb45aace1b | Merge pull request #458 in SHRINE/shrine from feature/SHRINE-2929-bock-ie-access to develop
* commit 'aba20b2e8e1bde... | | |
bendcarmen | 3696b05b903 | Bold updated queries per SHRINE-3174 | | |
bendcarmen | aba20b2e8e1 | Add edge to the restricted browser agents. | | |
Ben Carmen | 66536687507 | Merge pull request #459 in SHRINE/shrine from bugfix/SHRINE-3330-fix-problem-digest-parsing to develop
* commit 'bf8... | | |
David Walend | cba0bcc6cc2 | Got the build working with the new XML library for SHRINE-2926 | | |
David Walend | ffb5616beec | Last pass for SHRINE-3149 . I also fixed SHRINE-3285 on the way | | |
bendcarmen | bf88032820c | Fix of broken unit test. | | |
bendcarmen | 6181c5e95d8 | Fix of missing problemDigest for Query level status. | | |
David Walend | 20e3252f86a | Wrapping up SHRINE-1619 breakdown handling, and smoothing some error handling in MessageQueueWebClient. | | |
bendcarmen | 3090c0357e1 | Disallow access from an IE browser, notify the researcher to use another. | | |
David Walend | fa47218de08 | Wrapping up SHRINE-3149 | | |
David Walend | d99b3180301 | Handled some errors in the hub for SHRINE-3149 | | |
dwalend | 59f5015e964 | Merge remote-tracking branch 'origin/develop' into feature/SHRINE-3149-interpret-reinterpret-status | | |
dwalend | 1188b61bdbd | Updating a comment about a future ticket | | |
Ben Carmen | b5798a45693 | Merge pull request #455 in SHRINE/shrine from bugfix/SHRINE-3317-apply-temporal-constraing-to-all-groups to develop
... | | |
dwalend | 5053d736eef | Almost done with the QueuedQueryPoller's error handling for SHRINE-3149 | | |
dwalend | c3d305f589d | Merge remote-tracking branch 'origin/develop' into feature/SHRINE-3149-interpret-reinterpret-status | | |
dwalend | 98036c2425d | Record errors found with QUEUED queries as errors in the database when a query is crazy old for SHRINE-3149 and SHRIN... | | |
dwalend | 932d267d06a | Tomcat can reply with a 404 during start-up, so a 404 is OK to retry for SHRINE-3323 | | |
Marc-Danie Nazaire | 72fb95f35cc | Merge pull request #457 in SHRINE/shrine from bugfix/SHRINE-3053-change-the-check-for-dsa-authorization to develop
*... | | |
marc-danie | 865628cdb01 | SHRINE-3053 - Change the check for DSA authorization from hard-coded success to a database call - removed unused test... | | |
Marc-Danie Nazaire | 5d607325d1d | Merge pull request #456 in SHRINE/shrine from bugfix/SHRINE-3053-change-the-check-for-dsa-authorization to develop
*... | | |
marc-danie | 3a788757bcf | SHRINE-3053 - Change the check for DSA authorization from hard-coded success to a database call - added shrine.conf f... | | |
Marc-Danie Nazaire | cfe7b98422f | Merge pull request #454 in SHRINE/shrine from bugfix/SHRINE-3053-change-the-check-for-dsa-authorization to develop
*... | | |
marc-danie | 326a997f6ed | SHRINE-3053 - Change the check for DSA authorization from hard-coded success to a database call - fixed the path to t... | | |
marc-danie | 641397bfd7c | SHRINE-3053 - Change the check for DSA authorization from hard-coded success to a database call - moved the package.s... | | |
marc-danie | 8ad68e30db8 | SHRINE-3053 - Change the check for DSA authorization from hard-coded success to a database call - Added reference.con... | | |
bendcarmen | c0f8fa6c69d | Make sure that the timing for a panel is always in sync with what is selected by the temporal drop down stored in i2b... | | |
Ben Carmen | f96b2ab56c3 | Merge pull request #452 in SHRINE/shrine from fix-breakdown-parsing to develop
* commit 'a19dd7a4140596ea975e11709be... | | |
bendcarmen | a19dd7a4140 | Added pre 1.26 error statuses. | | |
bendcarmen | 005d06c8b89 | xit of test until I figure out what's happening...allow build to proceed. | | |
bendcarmen | 2f56b4f3930 | fixed a failing snapshot test. | | |
Ben Carmen | 7fb25b396d0 | Merge pull request #453 in SHRINE/shrine from bugfix/SHRINE-3284-fix-email to develop
* commit '8a5f5ef0894fe7034731... | | |
bendcarmen | 6820e90d140 | Change of Instution Result component to use internal status. | | |
marc-danie | e975c0fe239 | SHRINE-3053 - Change the check for DSA authorization from hard-coded success to a database call - update config for test | | |
marc-danie | 0777c8d4579 | SHRINE-3053 - Change the check for DSA authorization from hard-coded success to a database call - added test to check... | | |
marc-danie | ca8e173a4fb | SHRINE-3053 - Change the check for DSA authorization from hard-coded success to a database call - removed unused pom ... | | |
marc-danie | ab6b1729cfc | SHRINE-3053 - Change the check for DSA authorization from hard-coded success to a database call - removed comment | | |
marc-danie | e21f1199b38 | SHRINE-3053 - Change the check for DSA authorization from hard-coded success to a database call - removed unused rout... | | |
bendcarmen | 8a5f5ef0894 | Tweak of emailing instruction in error dialog | | |
bendcarmen | 99e81314bce | removed unused 'error' field from parse unit test. | | |
bendcarmen | 1ad0a75fcbe | Removed unused logic for 'error' element. | | |
dwalend | bb9c49e1bea | Merge remote-tracking branch 'origin/develop' into feature/SHRINE-3149-interpret-reinterpret-status | | |
bendcarmen | cfe0873aa2b | Fix of unit tests | | |
bendcarmen | 735a0f3f791 | Use internalStatus | | |
marc-danie | 7fea9e22bad | SHRINE-3053 - Change the check for DSA authorization from hard-coded success to a database call - renamed readApprove... | | |
bendcarmen | 5a311d1e7b5 | Fix of breakdown parsing | | |
marc-danie | 931559d81e4 | Merge branch 'develop' of https://open.med.harvard.edu/stash/scm/shrine/shrine into bugfix/SHRINE-3053-change-the-che... | | |
marc-danie | 9470069b8a5 | SHRINE-3053 - Change the check for DSA authorization from hard-coded success to a database call - renamed StewardDbTe... | | |
David Walend | 1748f892121 | Merge pull request #451 in SHRINE/shrine from bugfix/SHRINE-3320-shrine-results-do-not-travel to develop
* commit '1... | | |
David Walend | 15d57c68473 | Ahem. That should be not-before. For SHRINE-3320 | | |
David Walend | c04bbd6efce | Checking in an intermediate step for SHRINE-3149 | | |
marc-danie | 8ce71a6b39e | SHRINE-3053 - Change the check for DSA authorization from hard-coded success to a database call - moved StewardDataba... | | |
marc-danie | 26e605644c6 | SHRINE-3053 - Change the check for DSA authorization from hard-coded success to a database call - moved CreateTopicsM... | | |
marc-danie | 9972a2643bb | SHRINE-3053 - Change the check for DSA authorization from hard-coded success to a database call - moved Model.scala t... | | |
marc-danie | 4cc3e3c4ad2 | SHRINE-3053 - Change the check for DSA authorization from hard-coded success to a database call - moved the steward s... | | |
Ben Carmen | 76bfb8a4c01 | Merge pull request #448 in SHRINE/shrine from use-afterVersion to develop
* commit 'eb8b43bb7bd307d2f22c6e21317e5d36... | | |
David Walend | 22bee4abb3c | Merge pull request #449 in SHRINE/shrine from feature/SHRINE-3005-handle-errors-in-io-based-web to develop
* commit ... | | |
Ben Carmen | b1fcd12b343 | Merge pull request #450 in SHRINE/shrine from feature/SHRINE-2927-swap-xml-parser to develop
* commit '60eafe18a93b6... | | |
David Walend | 7461a5b753f | Interpret i2b2 query states for SHRINE-3149 | | |
bendcarmen | 60eafe18a93 | removed unused var | | |
bendcarmen | 6f0f897dcbc | Disallow IE xml parser. | | |
David Walend | c8d3d735660 | Merge pull request #445 in SHRINE/shrine from feature/SHRINE-3148-when-the-crc-queues-a-query-start to develop
* com... | | |
David Walend | 1217b19326b | Merge branch 'develop' into feature/SHRINE-3005-handle-errors-in-io-based-web | | |
dwalend | 671675a1a3d | Better error handling for MessageQueueWebClient for SHRINE-3005 | | |
Ben Carmen | dc165cb7d91 | Merge pull request #446 in SHRINE/shrine from improvement/SHRINE-3304-remove-old-webclient to develop
* commit '1191... | | |
David Walend | d896186a949 | Merge pull request #447 in SHRINE/shrine from bugfix/SHRINE-3309-crcresult-cannot-be-cast-to-resultprogress to develo... | | |
bendcarmen | eb8b43bb7bd | added dataVersion/afterVersion to the fetch requests and query state. | | |
Marc-Danie Nazaire | 26e6dbd4c1c | Merge pull request #444 in SHRINE/shrine from bugfix/SHRINE-3315-fix-json-encoding-of-querycellstatus to develop
* c... | | |
dwalend | 7023b50060c | Merge remote-tracking branch 'origin/bugfix/SHRINE-3315-fix-json-encoding-of-querycellstatus' into feature/SHRINE-314... | | |
bendcarmen | 1191cd17a21 | Removed shrine-webclient directory | | |
marc-danie | b15d5595b25 | Merge branch 'develop' of https://open.med.harvard.edu/stash/scm/shrine/shrine into bugfix/SHRINE-3315-fix-json-encod... | | |
dwalend | 1a68c3d45f9 | Handled out-of-order results for SHRINE-3309 | | |
dwalend | d99322b4427 | Renaming problem after putting it in the wiki for SHRINE-3148 | | |
dwalend | 08d15aaf179 | One last thing... | | |
dwalend | d95f077660d | Merge remote-tracking branch 'origin/develop' into feature/SHRINE-3148-when-the-crc-queues-a-query-start | | |
dwalend | c57299c9659 | Todo sweep for SHRINE-3148 | | |
dwalend | 18045714569 | Fixing the config missalignment from yesterday for SHRINE-3148 | | |
Ben Carmen | e38ca3a0e08 | Merge pull request #443 in SHRINE/shrine from Unflag-Query-part-2 to develop
* commit '2fe7fdbfd1b7e23cfaf8916ee6020... | | |
dwalend | d40e2b5eca4 | Merge remote-tracking branch 'origin/bugfix/SHRINE-3315-fix-json-encoding-of-querycellstatus' into feature/SHRINE-314... | | |
dwalend | 017df1b1b6c | Fixed property name typos | | |
marc-danie | f8d18e2df4c | SHRINE-3315 - Fix json encoding of QueryCellStatus and QueryCellStatusAndProblem | | |
David Walend | d64498ebb0f | Added shrine.conf values for various timeouts in SHRINE-3148 | | |
David Walend | 4082460e9f0 | Merge remote-tracking branch 'origin/develop' into feature/SHRINE-3148-when-the-crc-queues-a-query-start | | |
David Walend | 1e6d6e73d6d | QueuedQueryPoller will now stop polling if there are no queued queries, start again when a query is queued for SHRINE... | | |
David Walend | 8216e839e3f | Merge pull request #439 in SHRINE/shrine from feature/SHRINE-3100-fill-in-breakdowns-in-results to develop
* commit ... | | |
bendcarmen | 2fe7fdbfd1b | Finalized version of Flag/Unflag | | |
David Walend | df84d34ddf2 | Merge pull request #440 in SHRINE/shrine from feature/SHRINE-2327-better-error-handling-in-qepreceiver to develop
* ... | | |
Marc-Danie Nazaire | 80c56cabbe0 | Merge pull request #442 in SHRINE/shrine from bugfix/SHRINE-3314-timeoutseconds-should-not-be to develop
* commit 'd... | | |
marc-danie | daa97448bc2 | SHRINE-3314 - timeoutSeconds should not be required if no networkId is provided when calling shrine-api/qep/queryResu... | | |
Ben Carmen | 50dc52af420 | Merge pull request #438 in SHRINE/shrine from feature/SHRINE-3308-swap-out-polling to develop
* commit '7c6de07feee3... | | |
Marc-Danie Nazaire | 658b24f9119 | Merge pull request #441 in SHRINE/shrine from bugfix/SHRINE-3314-timeoutseconds-should-not-be to develop
* commit 'a... | | |
marc-danie | a731e9bf591 | SHRINE-3314 - timeoutSeconds should not be required if no networkId is provided when calling shrine-api/qep/queryResu... | | |
marc-danie | a65241fc939 | SHRINE-3314 - timeoutSeconds should not be required if no networkId is provided when calling shrine-api/qep/queryResu... | | |
marc-danie | d3cd44fa413 | SHRINE-3314 - timeoutSeconds should not be required if no networkId is provided when calling shrine-api/qep/queryResu... | | |
David Walend | a0bff1a4828 | Merge branch 'feature/SHRINE-3100-fill-in-breakdowns-in-results' into feature/SHRINE-2327-better-error-handling-in-qe... | | |
David Walend | 068087867e1 | Deleted QepReceiver for SHRINE-2327 | | |
David Walend | 0451677d2c5 | My own review pass for SHRINE-3100 | | |
David Walend | 93642b2fbb6 | Moved interpreting ResultOutputType to inside QepQueryBreakdownResultsRow, and inserted the correct value for SHRINE-... | | |
bendcarmen | 7c6de07feee | update of unit tests to reflect new polling url | | |
David Walend | 29f9eccff40 | Merge branch 'develop' into feature/SHRINE-3100-fill-in-breakdowns-in-results | | |
bendcarmen | bd34929e82e | Swapped out API call for polling | | |
David Walend | ab2fa1620c6 | Merging from develop | | |
Ben Carmen | e332b083d21 | Merge pull request #437 in SHRINE/shrine from feature/SHRINE-3201-Unflagging to develop
* commit '8a4317dba7e40d6267... | | |
Marc-Danie Nazaire | 1087367e769 | Merge pull request #436 in SHRINE/shrine from feature/SHRINE-3204-add-problem-digest-element-to to develop
* commit ... | | |
dwalend | 145ed1c9d22 | Breakdowns should be flowing again for SHRINE-3100 | | |
bendcarmen | 8a4317dba7e | tweak of width and height | | |
bendcarmen | df1e636675d | Implementation of Unflagging | | |
David Walend | 1c9a35bcc4e | Moving breakdowns through the works for SHRINE-3100 | | |
David Walend | 5d0aed8a095 | Added logic to handle error cases in breakdowns for SHRINE-3100 | | |
marc-danie | e4e3f36376d | SHRINE-3204 - Add Problem Digest Element to the Query Object in case of an Error - removed commented out import | | |
marc-danie | a186af2c600 | SHRINE-3204 - Add Problem Digest Element to the Query Object in case of an Error - add json content type in response ... | | |
marc-danie | 54d39328c3f | SHRINE-3204 - Add Problem Digest Element to the Query Object in case of an Error - minor renaming | | |
marc-danie | e6f15006645 | SHRINE-3204 - Add Problem Digest Element to the Query Object in case of an Error - modified to not include a problem ... | | |
David Walend | d63948f2abc | Found a more surgical way to do SHRINE-3100 by reinterpretting breakdown status | | |
David Walend | 2cb502d013b | Planning the next step for SHRINE-3100 | | |
David Walend | 7c3b8a8766d | Merge remote-tracking branch 'origin/develop' into feature/SHRINE-3100-fill-in-breakdowns-in-results | | |
dwalend | 82d9234b0a2 | Translation to JsonProblemDigest for SHRINE-3100 | | |
David Walend | ed329da0213 | Almost ready to put breakdowns back in for SHRINE-3100 | | |
marc-danie | 9d72dd608fa | Merge remote-tracking branch 'origin/feature/SHRINE-3204-add-problem-digest-element-to' into feature/SHRINE-3204-add-... | | |
marc-danie | e14e3a4f202 | SHRINE-3204 - Add Problem Digest Element to the Query Object in case of an Error - now works | | |
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