 mjdiloreto | 535de63b37f | SHRINE-3668: Make sure network is created if none is found. | | |
 marc-danie | 7a9eee52229 | Merge branches '2.0-webclient' and 'feature/SHRINE2020-78-technical-story-create-json' of https://open.med.harvard.ed... | | |
marc-danie | 65818c642b4 | SHRINE2020-81 - Server side conversion of JSON to i2b2 XML in QEP - removed use of SquerylAuditDao and AuditDao | | |
marc-danie | 72a8bc257a7 | SHRINE2020-81 - Server side conversion of JSON to i2b2 XML in QEP - code cleanup | | |
marc-danie | fdcf29fb800 | SHRINE2020-81 - Server side conversion of JSON to i2b2 XML in QEP - Code changes to support the changes for running t... | | |
 dwalend | 5662afcc196 | Added test of nulling out a config value for SHRINE-3647 | | |
marc-danie | 1a5fd0642aa | SHRINE2020-81 - Server side conversion of JSON to i2b2 XML in QEP - Code review improvements | | |
marc-danie | bd87303b439 | SHRINE2020-81 - Server side conversion of JSON to i2b2 XML in QEP - More code cleanup | | |
marc-danie | 05c8363004a | SHRINE2020-81 - Server side conversion of JSON to i2b2 XML in QEP - Code cleanup | | |
marc-danie | ae9742b4dcf | SHRINE2020-81 - Server side conversion of JSON to i2b2 XML in QEP - Adding unit tests and fixed audit logging | | |
marc-danie | b2fbf3d89bf | SHRINE2020-81 - Server side conversion of JSON to i2b2 XML in QEP - added authorization check | | |
dwalend | 3a99b630200 | some stray bits got into SHRINE-3647 - take them out | | |
dwalend | 3599bf2a47d | Merge remote-tracking branch 'origin/develop' into feature/SHRINE-3647-prototype-using-type-safe-config | | |
dwalend | 867344929aa | Got tests passing, and all features except variables in reference.conf working for SHRINE-3647 | | |
 Ben C | d30f860cf7f | Merge branch '2.0-webclient' into feature/SHRINE2020-91-inline-lab-validation | | |
Ben C | 7a28a3f4bce | Added background on drag over query group. | | |
Ben C | f1d143d4ad5 | saving work | | |
mjdiloreto | b1ff6a24119 | Catch bug in delayedUnbounded and delayedBounded where they do not try first before waiting. | | |
 Ben Carmen | 5e189d75c0c | Merge pull request #720 in SHRINE/shrine from feature/SHRINE2020-85-tweak-concept-group-styles to 2.0-webclient
* co... | | |
dwalend | 3632feacfe3 | Progress and setup for SHRINE-3647 | | |
dwalend | 33442418441 | First round of code review fixes for SHRINE-3545 | | |
mjdiloreto | 5093f0c55e0 | Merge branch 'develop' into bugfix/SHRINE-3654-Add-try-until-success-API | | |
mjdiloreto | d7cea45f7d2 | Created tests for RetryIO. | | |
dwalend | 4531bd5d04f | Adding timeout and some more cleanup for SHRINE-3545 | | |
mjdiloreto | b7e3ec6ad98 | SHRINE-3660: QEP should only respond if some unobserved query is not already completed. | | |
dwalend | 6fbbc71c9d2 | todos for handing SSL in a future ticket | | |
 Matthew DiLoreto | 027242a69e2 | Merge pull request #711 in SHRINE/shrine from bugfix/SHRINE-3645-Gracefully-handle-shrine-startup to develop
* commi... | | |
dwalend | 8fb1910dfb3 | Merge branch 'feature/SHRINE-3545-replace-the-jersey-http-client' into more-SHRINE-3545-replace-the-jersey-http-client | | |
dwalend | 3a5563f66ff | Early code review fixes from moving the code for SHRINE-3545 | | |
dwalend | 9b351fe7106 | More pom.xml cleanup for SHRINE-3545 | | |
dwalend | ad98943d246 | Cleaning the jersey client out of the pom.xmls for SHRINE-3545 | | |
marc-danie | 6699c35a098 | SHRINE2020-81 - Server side conversion of JSON to i2b2 XML in QEP | | |
dwalend | 1ccc988dd70 | Removed JerseyClient for SHRINE-3545 | | |
dwalend | 9d7895df6cc | Replaced jersey client with http4s client for SHRINE-3545 | | |
Ben C | 2821aedd6c9 | updated variable name | | |
Ben C | 3beef7a06d8 | fixed unit tests | | |
Ben C | 9f6b98248d5 | merge of 2.0-webclient | | |
Ben C | c37538afd05 | updated unit tests | | |
dwalend | 3171a6f4a22 | Successfully talking to the PM cell for SHRINE-3545 | | |
Ben C | 694d8e65930 | added padding to bottom of query term settings. | | |
Ben C | 4142844cde2 | updated unit tests. | | |
Ben C | c31d88434f2 | saving work from tweaking meeting with Anupama. | | |
dwalend | 8c6a59aeef1 | Merge remote-tracking branch 'origin/develop' into feature/SHRINE-3545-replace-the-jersey-http-client | | |
dwalend | 80cf066cc11 | First attempt to use the http4s client to talk to the PM cell for SHRINE-3545 | | |
mjdiloreto | f0727ea2102 | Qep goes crazy responding if QepService line 368 isn't always false. See SHRINE-3660. | | |
mjdiloreto | b8ff615cc33 | SHRINE-3657: No more warnings in shrine build and Xfatal-warnings on | | |
dwalend | 3c4f8bc94d7 | Crosstalk with SHRINE-3545 | | |
Ben C | 7f9119124ed | fixed date range unit test | | |
Ben C | 927ad404d07 | updated snapshot test. | | |
Ben C | e53330fcef1 | update of package lock | | |
Ben C | e6624953047 | fix of snapshot tests. | | |
dwalend | cd64e588ea1 | More dead code for SHRINE-3545 | | |
Ben Carmen | e6753ed47ca | Merge pull request #717 in SHRINE/shrine from feature/SHRINE2020-84-mui-concept-group to 2.0-webclient
* commit 'b54... | | |
Ben C | 62e538eb261 | made style changes specified in ticket. | | |
dwalend | 74676e4082b | Setting the stage to remove the jersey http client class for SHRINE-3545 | | |
dwalend | 5e509af53d0 | Getting rid of some dead code for SHRINE-3545 | | |
Ben C | b54819dc5dd | updated package to be absolute versions and updated unit tests. | | |
Ben C | 83f47ff52b5 | saving work | | |
dwalend | 4816c567150 | todos for SHRINE-3650 | | |
dwalend | 91930e0ea63 | Adding a qa.conf file to the works to test SHRINE-3647 | | |
dwalend | 47e0a9cdebe | Merge branch 'develop' into feature/SHRINE-3647-prototype-using-type-safe-config | | |
 David Walend | 29ca2354065 | Merge pull request #716 in SHRINE/shrine from feature/SHRINE-3655-the-build-slowed-down-with-the to develop
* commit... | | |
Ben C | c7b5b26c26f | Merge branch '2.0-webclient' into feature/SHRINE2020-84-mui-concept-group | | |
Ben C | 2b29572cd8c | potential solution for Material UI for QueryTermGroup | | |
mjdiloreto | f43c8d95169 | Created methods in RetryIO for only the methods that are actually used elsewhere in SHRINE. | | |
 Marc-Danie Nazaire | 812e1138c37 | Merge pull request #710 in SHRINE/shrine from feature/SHRINE2020-54-create-lucene-index-for-the to 2.0-webclient
* c... | | |
marc-danie | eeea87f5da8 | SHRINE2020-54 - Create Lucene index for the Ontology - Updated to use lucene-version property | | |
marc-danie | 281ffa981a3 | SHRINE2020-54 - Create Lucene index for the Ontology - Added isRoot field since using hlevel will not work for \\Diag... | | |
marc-danie | 6a70fcc3e57 | Merge branch '2.0-webclient' of https://open.med.harvard.edu/stash/scm/shrine/shrine into feature/SHRINE2020-54-creat... | | |
Matthew DiLoreto | 79db363cc9f | Merge pull request #714 in SHRINE/shrine from bugfix/SHRINE-3553-Clean-up-warnings-in-the-shrine-build to develop
* ... | | |
dwalend | 22c1e863a3c | Some more comments for SHRINE-3655 | | |
Marc-Danie Nazaire | 84ea9637d60 | Merge pull request #708 in SHRINE/shrine from feature/SHRINE2020-69-update-api-calls-for-browsing to 2.0-webclient
*... | | |
David Walend | 6d3e45de5b9 | Merge pull request #715 in SHRINE/shrine from feature/SHRINE-3655-the-build-slowed-down-with-the to develop
* commit... | | |
David Walend | 9944b83fabc | Merge pull request #712 in SHRINE/shrine from feature/SHRINE-3603-fail-fast-attempts-of-the-qep to develop
* commit ... | | |
dwalend | 74e428f20a0 | Reverting the scala-maven-plugin to 3.4.6 for some temporary relief - see SHRINE-3655 | | |
mjdiloreto | f237a63b736 | Merge branch 'develop' into bugfix/SHRINE-3553-Clean-up-warnings-in-the-shrine-build | | |
mjdiloreto | b25636bb378 | Merge branch 'develop' into bugfix/SHRINE-3645-Gracefully-handle-shrine-startup | | |
Matthew DiLoreto | 66c5e9c4d22 | Merge pull request #706 in SHRINE/shrine from bugfix/SHRINE-640-Adapter-Mapping-errors-should-specify to develop
* c... | | |
Ben C | a464d718f6f | saving work | | |
dwalend | f58cdf6b8f1 | Merge remote-tracking branch 'origin/develop' into feature/SHRINE-3647-prototype-using-type-safe-config | | |
dwalend | 0071f136b8d | Proof example for SHRINE-3647, but likely don't want to keep all these changes | | |
mjdiloreto | 5c9112b13ef | Convert multiple unsafeRunSync to nested flatmaps. | | |
Matthew DiLoreto | 581bc0ab66e | Merge pull request #713 in SHRINE/shrine from bugfix/SHRINE-3652-Connectivity-test-not-displaying to develop
* commi... | | |
marc-danie | 3b3200d2a4b | SHRINE2020-69 - Update api calls for browsing the hierarchy to use the Lucene index - Fixed issue with running | | |
marc-danie | 1f73f61632d | SHRINE2020-54 - Create Lucene index for the Ontology - Added comment about the input file format | | |
marc-danie | c108e473824 | SHRINE2020-69 - Update api calls for browsing the hierarchy to use the Lucene index - Increased default value for the... | | |
marc-danie | 23f3c911175 | SHRINE2020-54 - Create Lucene index for the Ontology - Added default value for the location of the lucene index per B... | | |
marc-danie | 3df66d6dc39 | SHRINE2020-54 - Create Lucene index for the Ontology - Updated the README | | |
marc-danie | 2a8eb3a0e3b | SHRINE2020-54 - Create Lucene index for the Ontology - update to test | | |
marc-danie | 2ff6307e258 | SHRINE2020-54 - Create Lucene index for the Ontology - Added unit test and readme | | |
mjdiloreto | 29123357ff0 | Remove unsafeRunSync from NetworkHealthScheduler. | | |
mjdiloreto | 6ce7893a70a | Fixed network connectivity test not checking after time limit reached. | | |
marc-danie | 6da9e00ddc8 | SHRINE2020-54 - Create Lucene index for the Ontology - Added note about c_* and m_* prefix in the field names | | |
marc-danie | 759df1b9576 | SHRINE2020-69 - Update api calls for browsing the hierarchy to use the Lucene index - Removed with BeforeAndAfter | | |
marc-danie | cbe1bcdad99 | SHRINE2020-69 - Update api calls for browsing the hierarchy to use the Lucene index - Updated to used @Test annotation | | |
mjdiloreto | 4ec63724364 | Fix usage of AdapterMappingException. | | |
marc-danie | d1aa1c6ae87 | SHRINE2020-54 - Create Lucene index for the Ontology - Modified so that all paths end with | | |
mjdiloreto | 8af9b606c30 | Added clause field to AdapterMappingException. | | |
dwalend | eefceaf4053 | Quickly get a response back to the researcher while taking 3 chances to talk to the hub for SHRINE-3603 | | |
mjdiloreto | b9e55712809 | Allow certain startup events to run after contextInitialized finishes. | | |
dwalend | a1bfde36bc7 | Tightening up API for SHRINE-3603 | | |
Ben C | 122128819a3 | Merge branch '2.0-webclient' into spec/SHRINE2020-71-material-ui | | |
mjdiloreto | 340dc56e55b | Test-commons packaging fix failed. | | |
mjdiloreto | 3818e8dd295 | SHRINE-3553: Fixed simple warnings in SHRINE build. | | |
Ben C | de08fe46431 | saving work | | |
dwalend | 6c21802531c | Now store an error in the QEP's database for being unable to submit a query for SHRINE-3603 | | |
marc-danie | 7676ae653b3 | SHRINE2020-54 - Create Lucene index for the Ontology - Removed code for creating Lucene index from a JSON file dump o... | | |
marc-danie | ea43a715c86 | SHRINE2020-54 - Create Lucene index for the Ontology - Removed code for adding I2B2 ontology to the SHRINE database | | |
marc-danie | 7fdcf2647f3 | Merge branches '2.0-webclient' and 'feature/SHRINE2020-54-create-lucene-index-for-the' of https://open.med.harvard.ed... | | |
marc-danie | 17b6e421df7 | SHRINE2020-54 - Create Lucene index for the Ontology - Added POM file | | |
marc-danie | fbfb2e7fe0a | SHRINE2020-69 - Update api calls for browsing the hierarchy to use the Lucene index - Created new Thread for the Luce... | | |
marc-danie | 2db78bba828 | SHRINE2020-69 - Update api calls for browsing the hierarchy to use the Lucene index - added comment about the hlevel ... | | |
dwalend | eaf06b9a2bb | More todos for SHRINE-3603 | | |
Ben C | 9a5e3edd35b | saving work | | |
marc-danie | b12704043e0 | SHRINE2020-69 - Update api calls for browsing the hierarchy to use the Lucene index - code refactoring | | |
marc-danie | 060a660a2c8 | SHRINE2020-69 - Update api calls for browsing the hierarchy to use the Lucene index - replaced check for lab detail t... | | |
dwalend | 4a0b45b9a7d | Merge remote-tracking branch 'origin/develop' into feature/SHRINE-3603-fail-fast-attempts-of-the-qep | | |
marc-danie | a084bf55d7c | SHRINE2020-69 - Update api calls for browsing the hierarchy to use the Lucene index - added lucene-version property | | |
Ben Carmen | ca72ff9d6e7 | Merge pull request #707 in SHRINE/shrine from feature/SHINE2020-48-navigate-ontology-tree to 2.0-webclient
* commit ... | | |
mjdiloreto | 3a91afdf52a | remove cats wildcard imports | | |
Ben C | a7cec6482f1 | saving work | | |
Matthew DiLoreto | 8a5fc3f953d | Merge pull request #695 in SHRINE/shrine from bugfix/SHRINE-3419-refactor-selectTheNetworkIO to develop
* commit 'f7... | | |
Matthew DiLoreto | 31a5107a655 | Merge pull request #700 in SHRINE/shrine from bugfix/SHRINE-3607-update-ExpressionTranslator-to-translate-all to deve... | | |
Ben C | 3e5be9ca0cd | removed extra check in if statement and unnesseary default value. | | |
Ben C | 0100db2308d | saving work | | |
mjdiloreto | 7b73ebcb754 | Saving work. | | |
mjdiloreto | f7976736753 | Merge branch develop into 'bugfix/SHRINE-3419-refactor-selectTheNetworkIO' | | |
marc-danie | 8d8fb09bda3 | SHRINE2020-69 - Update api calls for browsing the hierarchy to use the Lucene index - code cleanup | | |
marc-danie | cbf63b4f9ea | SHRINE2020-69 - Update api calls for browsing the hierarchy to use the Lucene index - removing code to generate the l... | | |
mjdiloreto | 71f5e6d62b6 | Moved more methods to IO, contextDestroyed conforms to IOScheduler. | | |
marc-danie | 018089b2f74 | SHRINE2020-69 - Update api calls for browsing the hierarchy to use the Lucene index - updated unit tests | | |
Ben C | 85f043fb42e | clean install of Material UI | | |
mjdiloreto | 1c1523052db | Use IO to syncronize shrine startup tasks properly | | |
marc-danie | b3029272424 | Merge branch '2.0-webclient' of https://open.med.harvard.edu/stash/scm/shrine/shrine into feature/SHRINE2020-69-updat... | | |
marc-danie | 4266eca9196 | SHRINE2020-69 - Update api calls for browsing the hierarchy to use the Lucene index | | |
Ben C | ee963c9f347 | added unit tests. | | |
Ben C | 0fdac4eafcb | added unit test for tree | | |
Ben C | 87763680e16 | saving work | | |
marc-danie | 604cca86295 | SHRINE2020-54 - Create Lucene index for the Ontology - fixed hlevel1 | | |
Ben C | 9e898138caa | saving work | | |
dwalend | dd84e015c00 | Merge branch 'develop' into feature/SHRINE-3603-fail-fast-attempts-of-the-qep | | |
Ben C | 8eaa8514cd3 | Merge branch '2.0-webclient' into feature/SHINE2020-48-navigate-ontology-tree | | |
dwalend | 88a9a081634 | Moving Shrine's version to 2.1.0-M3 to open sprint 3 | | |
Ben C | 9f0de43a732 | style tweak | | |
Ben C | 813a6a5add5 | style changes via UAT | | |
Ben C | 5c542ea6482 | updated margin | | |
mjdiloreto | ef4d9de54e2 | Add exception to represent adapter mapping failure due to unmappable terms. | | |
mjdiloreto | 296aaea2823 | Moved reload mappings logic from AdapterMappings to AdapterMappingsDb. | | |
mjdiloreto | 3f056498063 | Refactored AdapterMappingsDb to return IO instead of Unit, moved adapter mapping mocking to ExpressionTranslator. | | |
dwalend | 6b3014a4462 | todos for SHRINE-3603 | | |
Matthew DiLoreto | 45cbf2d5228 | Merge pull request #702 in SHRINE/shrine from bugfix/SHRINE-2030-A-misconfigured-mappings-file to develop
* commit '... | | |
mjdiloreto | 606197a1b10 | Change to comment suggested in review. | | |
Ben C | 281fd4e5900 | saving layout changes. | | |
Ben Carmen | c24c56e5154 | Merge pull request #705 in SHRINE/shrine from feature/SHRINE2020-43-UAT2-ontology-layout to 2.0-webclient
* commit '... | | |
marc-danie | 82e002804eb | SHRINE2020-54 - Create Lucene index for the Ontology - minor log edit | | |
marc-danie | c66dd383131 | SHRINE2020-54 - Create Lucene index for the Ontology - code for indexing from a delimited file | | |
marc-danie | 9abbb3b252f | Merge branch '2.0-webclient' of https://open.med.harvard.edu/stash/scm/shrine/shrine into feature/SHRINE2020-54-creat... | | |
marc-danie | 07ef7a66557 | Merge remote-tracking branch 'origin/develop' into develop | | |
marc-danie | 3776882beea | Fixed failing build by adding missing imports | | |
Matthew DiLoreto | c0224fb64e3 | Merge pull request #692 in SHRINE/shrine from bugfix/SHRINE-3634-refactor-networkhealthscheduler to develop
* commit... | | |
Ben C | 2a818f551f2 | moved inline styles to css class. | | |
Ben C | 476f7dba3cb | saving work | | |
mjdiloreto | f59aeb5cb2b | Simplified Expression code, added unit test for unmappable terms appearing in the thrown MappingException. | | |
Ben C | ff545cc45c7 | Merge branch '2.0-webclient' into feature/SHRINE2020-43-UAT2-ontology-layout | | |
mjdiloreto | e1c59b52d69 | Changed signature of Term, translate now gives human-readable names of unmapped terms. | | |
Ben C | fbc23517c5c | fix of failed unit test and tweak of style. | | |
mjdiloreto | 8489b6b2d9f | Remove requirement that OR expressions be run even if one or more terms are unmappable. | | |
Ben C | c5acfef4de4 | removed unncessary browser animation styles | | |
Ben C | 0bc97beadc1 | style fix. | | |
Ben C | 2fb4c9c86b6 | added style back in. | | |
Ben C | afec6b4db84 | style cleanup | | |
Ben C | 2d775fd8aec | added transition style | | |
Ben C | 1b35da21bd2 | tweak of styles | | |
marc-danie | f1bcb8d87ac | SHRINE2020-54 - Create Lucene index for the Ontology - code for creating the index from a JSON file | | |
Ben C | 02e2680a65d | put run query back to the width it was at. | | |
marc-danie | de424d31baa | SHRINE2020-54 - Create Lucene index for the Ontology - Db creation and access | | |
Ben C | bf33b1fd47e | potential solution for feeback from UAT2 | | |
mjdiloreto | 8eed02ccb5c | Adapter Mapping Problem now reports all unmappable terms. | | |
Marc-Danie Nazaire | 1d7a38ac204 | Merge pull request #704 in SHRINE/shrine from feature/SHRINE2020-27-create-the-ability-for-a-user to 2.0-webclient
*... | | |
marc-danie | f7f9a85c8c8 | SHRINE2020-27 - Create the ability for a user to click a "Run" button to execute the query - removed absolute position | | |
Marc-Danie Nazaire | 37da4a7ee85 | Merge pull request #703 in SHRINE/shrine from feature/SHRINE2020-27-create-the-ability-for-a-user to 2.0-webclient
*... | | |
marc-danie | acc6286b944 | SHRINE2020-27 - Create the ability for a user to click a "Run" button to execute the query - removed top css style | | |
Marc-Danie Nazaire | eb36c958427 | Merge pull request #698 in SHRINE/shrine from feature/SHRINE2020-27-create-the-ability-for-a-user to 2.0-webclient
*... | | |
marc-danie | 88b8d509201 | SHRINE2020-27 - Create the ability for a user to click a "Run" button to execute the query - removed top css style | | |
mjdiloreto | 3ecac51d564 | Log any fatal exceptions from Bootstrap in shrine-api.log before crashing Tomcat. | | |
marc-danie | 02d0efa8161 | Merge branches '2.0-webclient' and 'feature/SHRINE2020-27-create-the-ability-for-a-user' of https://open.med.harvard.... | | |
David Walend | a6ab20fe1d0 | Merge pull request #701 in SHRINE/shrine from feature/SHRINE-3644-remove-json4s-dependency-from to develop
* commit ... | | |
Ben C | f9f8db97969 | saving work | | |
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