SHRINE
  1. SHRINE

shrine

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  1. SHRINE
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AuthorCommitMessageCommit dateBuilds
Xavier HaurieXavier Haurie
f22c447b559Revert "SHRINE2020-1633 : commit in-progress state" This reverts commit d7a9eac178ae62de49172d18986b6d8e3049f04c.
Xavier HaurieXavier Haurie
d7a9eac178aSHRINE2020-1633 : commit in-progress state
dwalenddwalend
a3e0b183862Changed over the receiver to use a cats io atomic cell for SHRINE2020-1610
David WalendDavid Walend
473d3944867Pull request #1504: Feature/SHRINE2020 1625 Merge in SHRINE/shrine from feature/SHRINE2020-1625 to feature/SHRINE202...
dwalenddwalend
ce2b68ab60dFix for SHRINE2020-1609
David WalendDavid Walend
749f9bfe2c1Pull request #1502: Feature/SHRINE2020 1623 Merge in SHRINE/shrine from feature/SHRINE2020-1623 to feature/SHRINE202...
dwalenddwalend
04d8fc389a3No real advantage to letting Cats IORuntime supply a blocking executor for SHRINE2020-1614
dwalenddwalend
76752edd29cSHRINE2020-1612 is all set with the default values in the latest library
Marc-Danie NazaireMarc-Danie Nazaire
52974e7a431Pull request #1507: SHRINE2020-1635 - Fix group id of docker custom lifecycle dependency Merge in SHRINE/shrine from...
dwalenddwalend
5fbfc7b9e0bGot rid of a lot of use of scala.concurrent.blocking in database calls, and cleaned up some other not-useful bits for...
dwalenddwalend
6cce826e186Code in the apps looks good for SHRINE2020-1614
dwalenddwalend
ea19deb6c96SHRINE2020-1614 tidying up in the adapter
dwalenddwalend
9ce936fa66fThe great thing about having the libraries right is that the top-level doesn't need to do anything special SHRINE2020...
Marc-Danie NazaireMarc-Danie Nazaire
e4cf4645875SHRINE2020-1631 - Prototype a map of patient count results - Removed ignore of failing OntologyService unit tests in ...
Marc-Danie NazaireMarc-Danie Nazaire
46bc537f46bSHRINE2020-1631 - Prototype a map of patient count results - Ignore failing OntologyService unit tests in Bamboo
Marc-Danie NazaireMarc-Danie Nazaire
60b336e9f7cSHRINE2020-1631 - Prototype a map of patient count results - Now maps real query results
Marc-Danie NazaireMarc-Danie Nazaire
da3d1d8fc5dSHRINE2020-1635 - Fix group id of docker custom lifecycle dependency
dwalenddwalend
2489fb1c81eUsing the daemon threadpool in Lucene for SHRINE2020-1614
Marc-Danie NazaireMarc-Danie Nazaire
047a907bbb3change to trigger build
dwalenddwalend
c1518fdc0adComment cleanup in the hub service for SHRINE2020-1614
dwalenddwalend
962b5a9f04fMarc-Danie spotted some loose comments in another review
dwalenddwalend
6d794367cabNow using a daemon execution context for long polls for messages for SHRINE2020-1614
dwalenddwalend
0fb6c3bf8a3Execution context changes around RepeatedIOTask for SHRINE2020-1614
dwalenddwalend
3192b49230fMore use of the cats IO globals for SHRINE2020-1614
dwalenddwalend
9131f9502abUsing the i2b2 client exeuction context for calls to i2b2 for SHRINE2020-1614
Marc-Danie NazaireMarc-Danie Nazaire
c37ab2cee1aSHRINE2020-1631 - Prototype a map of patient count results - Set version to 3.3.2 and cleared out db update sql files
Marc-Danie NazaireMarc-Danie Nazaire
b1a7d990021SHRINE2020-1631 - Prototype a map of patient count results
dwalenddwalend
b08271c7facturned on some disabled tests for SHRINE2020-1615
dwalenddwalend
a1d75a808ccMerge branch 'feature/SHRINE2020-1628' into feature/SHRINE2020-1615
dwalenddwalend
b7f1a38aa67A pack of todos to wrap up SHRINE2020-1628
dwalenddwalend
d159f13133dNow works with the afterInitialized in the main block SHRINE2020-1628
dwalenddwalend
cfdaf5af984Got it working again SHRINE2020-1628
David WalendDavid Walend
a78a5b81eb0Pull request #1503: Feature/SHRINE2020 1624 Merge in SHRINE/shrine from feature/SHRINE2020-1624 to feature/SHRINE202...
dwalenddwalend
eda84489aebKicked shutdown work into the future and out of SHRINE2020-1628
dwalenddwalend
0cbd29e2210Tweaking the log and letting the mystery get deeper for SHRINE2020-1628
dwalenddwalend
e6f89ffb702Restored the code for an orderly shutdown for SHRINE2020-1628
dwalenddwalend
d013525f816Got everything starting in the same big IO for SHRINE2020-1628
David WalendDavid Walend
d3d7458c462Pull request #1501: Feature/SHRINE2020 1622 Merge in SHRINE/shrine from feature/SHRINE2020-1622 to feature/SHRINE202...
dwalenddwalend
8c7dde4516bSome renaming to be more particular about the dispatcher SHRINE2020-1628
dwalenddwalend
ff9ad5197b8Got a shared dispatcher working for SHRINE2020-1628
David WalendDavid Walend
fb6e2cfc8d5Pull request #1500: Feature/SHRINE2020 1621 Merge in SHRINE/shrine from feature/SHRINE2020-1621 to feature/SHRINE202...
David WalendDavid Walend
f16d509f982Pull request #1498: Feature/SHRINE2020 1620 Merge in SHRINE/shrine from feature/SHRINE2020-1620 to feature/SHRINE202...
David WalendDavid Walend
c21ed133236Pull request #1499: Feature/SHRINE2020 1618 Merge in SHRINE/shrine from feature/SHRINE2020-1618 to feature/SHRINE202...
dwalenddwalend
17ff604a9efNow doing everything with the dispatcher in context for SHRINE2020-1628
dwalenddwalend
153fb057088Starting a dispatcher and a bit of refactoring for SHRINE2020-1628
dwalenddwalend
afb4c86e521Merge remote-tracking branch 'origin/feature/SHRINE2020-1218-cats-effect-upgrade' into feature/SHRINE2020-1625
David WalendDavid Walend
7d48a34a3a9Pull request #1497: Feature/SHRINE2020 1617 Merge in SHRINE/shrine from feature/SHRINE2020-1617 to feature/SHRINE202...
David WalendDavid Walend
1a1aa86fb02Pull request #1496: Feature/SHRINE2020 1616 Merge in SHRINE/shrine from feature/SHRINE2020-1616 to feature/SHRINE202...
dwalenddwalend
e016ecfb0cfMerge branch 'feature/SHRINE2020-1355' into feature/SHRINE2020-1625
dwalenddwalend
11fe5ca9417merging
dwalenddwalend
c4c14ed2ea8Merge branch 'feature/SHRINE2020-1624' into feature/SHRINE2020-1623
dwalenddwalend
c053f3cea2eMerge branch 'feature/SHRINE2020-1622' into feature/SHRINE2020-1624
dwalenddwalend
a3446f8aac0Merge branch 'feature/SHRINE2020-1621' into feature/SHRINE2020-1622
dwalenddwalend
23e0614589bMerge branch 'feature/SHRINE2020-1620' into feature/SHRINE2020-1621
dwalenddwalend
c580782146aSome notes to wrap up SHRINE2020-1625
dwalenddwalend
bfcadcf458dRevert "Extracting the dispatcher one layer for SHRINE2020-1625" This reverts commit 4ffba50fe7bbe00f569bd35fe5ccaa2...
dwalenddwalend
bf4a6ff1144Revert "Now starting the IOs for SHRINE2020-1625" This reverts commit e4a8c97390d8b4b680deaab5d723e12be49ec84d.
David WalendDavid Walend
2d06661a687Pull request #1495: Feature/SHRINE2020 1611 cats io upgrade changes in commons util Merge in SHRINE/shrine from feat...
dwalenddwalend
e4a8c97390dNow starting the IOs for SHRINE2020-1625
dwalenddwalend
a18ed491209Merge branch 'feature/SHRINE2020-1618' into feature/SHRINE2020-1620
dwalenddwalend
e51ae890083Merge branch 'feature/SHRINE2020-1617' into feature/SHRINE2020-1618
dwalenddwalend
fdecea54d71Merge branch 'feature/SHRINE2020-1616' into feature/SHRINE2020-1617
dwalenddwalend
5f4fd276d4eGetting this ready for review for SHRINE2020-1616
dwalenddwalend
4ffba50fe7bExtracting the dispatcher one layer for SHRINE2020-1625
dwalenddwalend
d2f9d837ab6Got the hub working - and maybe downstream nodes - in SHRINE2020-1625
dwalenddwalend
fafadede426Got an example ping service working for SHRINE2020-1625
dwalenddwalend
b4defdfdf22Upgrade circe to 1.4.x for SHRINE2020-1355
dwalenddwalend
cfacc96cec0Got rid of old cats stuff. Cerce next. SHRINE2020-1623
dwalenddwalend
810291f870fMockCRC changes for cats io upgrade for SHRINE2020-1623
dwalenddwalend
ff88151d4d3shrine-api cats IO upgrade for SHRINE2020-1623
dwalenddwalend
6a5dc1afd35CATS IO upgrade for Authz
dwalenddwalend
b8845474b6aCATS IO upgrade for Authz
dwalenddwalend
061d0e9b943missed checking in SHRINE2020-1621
dwalenddwalend
23aa65dbf46aim3 service changes for the cats upgrade SHRINE2020-1622
dwalenddwalend
0a14f1016b6adapter changes for CATs IO upgrade for SHRINE2020-1622
dwalenddwalend
e09664bc5bfsetup tools to latest cats IO for SHRINE2020-1621
dwalenddwalend
7c0102f1420Got the researcher metrics tool compiling for SHRINE2020-1621
dwalenddwalend
3e02a005c0bGot the networks metrics tool and the http4s client test all set for SHRINE2020-1621
dwalenddwalend
fd2d16b2171QEP and ontology now compiling, and probably working with a 500 caveat for SHRINE2020-1620
dwalenddwalend
1c56a09e691Merge branch 'feature/SHRINE2020-1616' into feature/SHRINE2020-1620
dwalenddwalend
2ee7252decaFixed one of the header bits for SHRINE2020-1616
dwalenddwalend
321b77691b2Merge branch 'feature/SHRINE2020-1617' into feature/SHRINE2020-1618
dwalenddwalend
d64fb143f20Merge branch 'feature/SHRINE2020-1616' into feature/SHRINE2020-1617
dwalenddwalend
645a37e53d9Got tests compiling but help with SHRINE2020-1616
dwalenddwalend
77d57ee0d5aMade some progress on commons/auth, then asked for help with SHRINE2020-1616
dwalenddwalend
12a4b66d41aCats IO updates to hub/service for SHRINE2020-1618
dwalenddwalend
0b0f46d5dc6Cats IO updates to hub/service for SHRINE2020-1618
dwalenddwalend
570ce93718bMerge branch 'feature/SHRINE2020-1611-cats-io-upgrade-changes-in-commons-util' into feature/SHRINE2020-1617
dwalenddwalend
6e436fe0f15Some stray bits from LogCensor for SHRINE2020-1611
dwalenddwalend
331df14c655Cats IO 3 upgrade for hub/message-service for SHRINE2020-1617
David WalendDavid Walend
0be171fe074Pull request #1494: SHRINE2020 1606 Merge in SHRINE/shrine from SHRINE2020-1606 to feature/SHRINE2020-1218-cats-effe...
dwalenddwalend
9d0c06a3f2dGot Auth* compiling for SHRINE2020-1616
dwalenddwalend
48754a7cb46Missed the pom.xml changes for SHRINE2020-1611
dwalenddwalend
934c937f8c9Got commons/util compiling and passing tests for SHRINE2020-1611
dwalenddwalend
6be911c8671Preliminaries for using scala fix to do the cats IO upgrade - SHRINE2020-1606
Ansible DeployAnsible Deploy
b463cb1c025Merge release branch release/4.2.0 into master.
Ansible DeployAnsible Deploy
7476dea3527Update POMs with release version 4.2.0.
Andrew DionAndrew Dion
1638b26b570Revert changelist from -RC1 to -SNAPSHOT to appease git-flow script
dwalenddwalend
15e26d57a03Solved the version number mysteries for SHRINE2020-1606
David WalendDavid Walend
2dc41eb0162Pull request #1492: A better fix for the DB change notifier for SHRINE2020-1603 Merge in SHRINE/shrine from feature/...
David WalendDavid Walend
1e4eb98aacbPull request #1493: Feature/SHRINE2020 1567 Merge in SHRINE/shrine from feature/SHRINE2020-1567 to develop * commit...
dwalenddwalend
171cae3cceaAdded goal versions for the cats IO update for SHRINE2020-1606
dwalenddwalend
be54e73b20cRenamed the existing dependencies I'll be upgrading to old-* for SHRINE2020-1606
dwalenddwalend
f8e5c27e85cMerge branch 'feature/SHRINE2020-1603' into feature/SHRINE2020-1218-cats-effect-upgrade
dwalenddwalend
99db5dbcd3eDowngraded AWS libraries back for SHRINE2020-1567
dwalenddwalend
21f9933c2e2Downgraded AWS libraries back for SHRINE2020-1567
dwalenddwalend
e9d9a3eb4eeEasy library upgrades for SHRINE2020-1567
dwalenddwalend
d905056db8cAll the maven libraries for SHRINE2020-1567
dwalenddwalend
16772abe2c4Backing off a log level for SHRINE2020-1603
dwalenddwalend
caabe148c96A better fix for the DB change notifier for SHRINE2020-1603
dwalenddwalend
0608bb79fc7Building an RC1
dwalenddwalend
1b63b322193Merging release/4.2.0 now that we have an RC1
dwalenddwalend
9da885b0388Moved pom.xml to 4.2.0-RC1-SNAPSHOT
David WalendDavid Walend
87ca4d89a22Pull request #1491: Potential fix for SHRINE2020-1547 Merge in SHRINE/shrine from bugfix/SHRINE2020-1547 to release/...
dwalenddwalend
9ad0018fafcReview comments from Xav for SHRINE2020-1547
dwalenddwalend
3377d69b7bdChanged up the comments to reference future work for SHRINE2020-1547
dwalenddwalend
554e211d756Potential fix for SHRINE2020-1547
dwalenddwalend
c4980367d9fAdded a shutdown hook to handle general interrupts more gracefully for SHRINE2020-1592
dwalenddwalend
f642c3e1edbCouple of comments to close out SHRINE2020-1592
David WalendDavid Walend
7ef43655bfePull request #1487: Scaleup test script tweaks Merge in SHRINE/shrine from SHRINE2020-1457 to develop * commit '39b...
David WalendDavid Walend
0939d7357bbPull request #1490: Bugfix/SHRINE2020 1586r Merge in SHRINE/shrine from bugfix/SHRINE2020-1586r to release/4.2.0 * ...
dwalenddwalend
92fd3f752b6Added the QUEUED query poller for SHRINE2020-1592
dwalenddwalend
2cdd61f6088A few more comments to close out this step for SRHINE2020-1590
dwalenddwalend
ae29fc64212Also needed to catch where queries are loaded in for SHRINE2020-1586
dwalenddwalend
7bb8924cb0aSupplying a ResultOutputType of last resort for SHRINE2020-1586
dwalenddwalend
5cd07845fc3A couple of tweaks while closing out this work
dwalenddwalend
477ea6a9bc2Adding the full breakdown config for SHRINE2020-1590
dwalenddwalend
cfd2b54694dGot the database business changed over to 'create if exists' and fixed a typo for SHRINE2020-1590
dwalenddwalend
ba5c9a824e8Got the main() to run queries and report results for SHRINE2020-1590
dwalenddwalend
e9ee2ae9722Set up the exec frame for SHRINE2020-1590
dwalenddwalend
f1ec41489fdMost of the legwork to set up a freestanding adapter exec for SHRINE200-1590
dwalenddwalend
c0f87150110Changed over the adapter to use H2 by default at runtime for SHRINE2020-1589
dwalenddwalend
1941c07812dMerge branch 'feature/SHRINE2020-1573' into feature/SHRINE2020-1589
Marc-Danie NazaireMarc-Danie Nazaire
4d60b6d0395Pull request #1489: Feature/SHRINE2020 1583 Merge in SHRINE/shrine from feature/SHRINE2020-1583 to develop * commit...
Marc-Danie NazaireMarc-Danie Nazaire
db844e94706Pull request #1488: Feature/SHRINE2020 1583 - Remove zookeeper references in kafka setup in docker Merge in SHRINE/s...
dwalenddwalend
7927e3b847dMoved the develop branch to version 4.3.0-SNAPSHOT
dwalenddwalend
c3e4c4a21d4Merge branch 'develop' into release/4.2.0
Marc-Danie NazaireMarc-Danie Nazaire
7add1d0f6a7SHRINE2020-1583 - Remove zookeeper references in kafka setup in docker - reduce sleep time from 255s to 75s when star...
dwalenddwalend
39b03911fe4More jmeter script changes for SHRINE2020-1457
Marc-Danie NazaireMarc-Danie Nazaire
cc1edaeb7a6SHRINE2020-1583 - Remove zookeeper references in kafka setup in docker - Fixed issue with refreshShrineNode not runni...
Marc-Danie NazaireMarc-Danie Nazaire
79f3a75dd08SHRINE2020-1583 - Remove zookeeper references in kafka setup in docker
dwalenddwalend
3e8a3387adeUpdates for testing vs new ontologies with new json for SHRINE2020-1580
dwalenddwalend
45d4e21e7b7Updates to jmeter scripts for 4.2 for SHRINE2020-1457
dwalenddwalend
f8fd45a8f46Some cleanup for show-and-tell of SHRINE2020-1580
dwalenddwalend
74dc19802ffSome cleanup for show-and-tell of SHRINE2020-1580
dwalenddwalend
739f1468c45Added more example scripts for SHRINE20020-1580
dwalenddwalend
35386d2c6dcGot the script down to a funciton for SHRINE2020-1580
dwalenddwalend
2099e03b532More cleanup - code is compiled just once for SHRINE2020-1580
dwalenddwalend
b1c3326ccbbDo one term at a time for SHRINE2020-1580
Xavier HaurieXavier Haurie
b8ad0e0b991SHRINE2020-1579 : fix configuration file
dwalenddwalend
dfbe7da984cGot it working with Scala's own interpreter for SHRINE2020-1580
dwalenddwalend
5b76f4a6828Got a first pass working for SHRINE2020-1580
Xavier HaurieXavier Haurie
ef6637992eeSHRINE2020-1579 : clean-up
Xavier HaurieXavier Haurie
21bb6c15af4SHRINE2020-1579 : clean-up
dwalenddwalend
e25d5f885ffPlanning for SHRINE2020-1580 - scala script for adapter mapping
Xavier HaurieXavier Haurie
cc28e22b9c8SHRINE2020-1579 : add to unit test the ability to record search performance
dwalenddwalend
042aecd79e5More to delete for SHRINE2020-1572
dwalenddwalend
11c8e9550ebSome clean-up for SHRINE2020-1572
Xavier HaurieXavier Haurie
aba48aea335SHRINE2020-1579 : add a unit test for loading the adapter mapping file (CSV)
Xavier HaurieXavier Haurie
6bfe726abb1SHRINE2020-1579 : make loadMappings() work with Bootstrap by wrapping it with IO
Xavier HaurieXavier Haurie
8358f8cd5bbSHRINE2020-1579 : compiles
dwalenddwalend
345ea53902aUsing parameters and giving up on just one CRC id for SHRINE2020-1572
dwalenddwalend
4912622ab3cNow getting QUEUED query results without a database call in the adapter for SHRINE2020-1572
dwalenddwalend
48fcedaaa0bChaser for SHRINE2020-1572
dwalenddwalend
19d90fd1b92Added the count result id to ResultProgress for SHRINE2020-1572
dwalenddwalend
f2fbc675e9cCommented out a lot of DB code for SHRINE2020-1572
Xavier HaurieXavier Haurie
aeb50aeb577Revert "SHRINE2020-1579 : clean-up" This reverts commit 5f0053fc3b6273c9f705b294cf9f10b61f5bd499.
dwalenddwalend
28f0ad6b35cNow works with the hub deciding when to check queued queries for SHRINE2020-1572
dwalenddwalend
afa13b49f01Lined up some dominoes for SHRINE2020-1572 - next will try pushing them over
Xavier HaurieXavier Haurie
5f0053fc3b6SHRINE2020-1579 : clean-up
Xavier HaurieXavier Haurie
3c65ff99f7aSHRINE2020-1579 : clean-up
Marc-Danie NazaireMarc-Danie Nazaire
6ef503a838aSHRINE2020-1579 - Adapter Mapping using Lucene - Added batching of commits and set RAM size for IndexWriter
dwalenddwalend
70a1eb235f3The receiver should be ready to receive and reply to check queued query commands for SHRINE2020-1572
Xavier HaurieXavier Haurie
9e949bbb989SHRINE2020-1579 : index real data, add search capability
dwalenddwalend
03f49bb38cfNow making a result progress for SHRINE2020-1572
dwalenddwalend
c83ac6f56e1Copied the interpretation of responses from the poller to the interrogator for SHRINE2020-1572
Xavier HaurieXavier Haurie
290bc1db5a4SHRINE2020-1579 : move to adapter module
dwalenddwalend
c6efa6328f0A few bits in askCrc to wrap up the simplification for SHRINE2020-1572
dwalenddwalend
f9971724e18Cleanup pass for requestQueuedResultFromCrc for SHRINE2020-1572
dwalenddwalend
29698b25148Cleaned up retrieveIfComplete for SHRINE2020-1572
dwalenddwalend
13e5cea99deFirst pass of cleanup in retrieveQueryResults for SHRINE2020-1572
dwalenddwalend
e8726dc1a5eCleaned up the bit of code that retrieves breakdowns for SHRINE2020-1572
dwalenddwalend
01063e38c43Now getting the count back a bit leaner for SHRINE2020-1572
dwalenddwalend
219c101de5dAnother step deeper for SHRINE2020-1572
dwalenddwalend
4af527bdca3Cleanup for the previous step for SHRINE2020-1572
dwalenddwalend
e2f5559b466Revert "Removed some bits without breaking anything for SHRINE2020-1572" This reverts commit fde39d39840dac66c87628d...
Xavier HaurieXavier Haurie
56a268c7807SHRINE2020-1579 : clean-up
Xavier HaurieXavier Haurie
3d4cea258a1SHRINE2020-1579 : second cut, seeks exact match on the lucene concept, returns the entire local concept