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This is a general checklist for you to keep track of your progress in the installation process. Feel free to print this out as a reference as you go along. 


ChapterTask
3
  •  Install Linux OS
  •  Setup shrine system user
  •  Add shrine user to sudoers file
  •  Install standard packages (text editor, etc.)

4

  •  Install Java JDK
  •  Setup Java variables
5
  •  Install Apache Tomcat
  •  Set correct permissions for Tomcat folders
6
  •  Install MariaDB (MySQL)
  •  Create shrine database user
  •  Setup 4 SHRINE databases
  •  Load schema into SHRINE databases 
  •  Grant all privileges to shrine database user
  •  Customize Tomcat's context.xml file
7
  •  Install SHRINE application
    •  shrine-api.war
8
  •  Customize shrine.conf file
  •  Setup Shrine application user
  •  Setup Data Steward
9
  •  Configure the Data Steward user
10
  •  Create SHRINE keystore
  •  Create certificate signing request (CSR)
  •  Receive signed cert
  •  Import certificates
    •  Hub CA cert
    •  Hub HTTPS cert
    •  Signed cert (from the CSR)
  •  Configure keystore in shrine.conf
  •  Configure server.xml file

11

  •  Create shrine_ont user / schema in i2b2
  •  Grant all privileges to tables, sequences, and functions to shrine_ont user
  •  Create ontology tables
  •  Load schema into tables
  •  Configure database lookups for new schema
  •  Configure table_access table for new schema
  •  Setup Adapter Mappings file
12
  •  Configure shrine.conf to point to i2b2 installation
    •  PM cell
    •  ONT cell
    •  CRC cell
  •  Add SHRINE project into i2b2pm table (pm_project_data)
  •  Add SHRINE CRC url into i2b2pm table (pm_cell_data)
  •  Configure ont-ds.xml file in i2b2
13
  •  Configure shrine.conf to point to the network hub
  •  Have network hub admin add your node
14
  •  Verify operation by signing into each application
    •  Shrine application
    •  Shrine Data Steward application
    •  Shrine Legacy application
    •  Shrine Dashboard application
  •  Create a query topic and run a query