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If you are not in the module-scripts directory but would like to run a script without first changing to that directory, you have two options. Either type the full/relative path to the script file in the shell (for example, you might need to type “src/isf/module-scripts/ei-...”) or add the “module-scripts” directory to the Windows Path environment variable. Google for how to set Windows environment variables and you can adjust your “user” Path variable to include this directory. See the following image as an example. Google for instructions for doing this.

src/isf/ontology 

 This is an SVN external to the “VIVO-ISF Ontology” from GitHub (but the ontology directory only, not the root directory of the GitHub repository): https://github.com/vivo-isf/vivo-isf-ontology/trunk/src/ontology 

by using the GitHub SVN integration described here: https://help.github.com/articles/support-for-subversion-clients/ 

This pulls in the “VIVO-ISF ontology” files that are needed to build the eagle-i ontology files. An SVN update done from the root of the eagle-i trunk checkout should pull in any ISF changes unless the external is pinned to a specific ISF commit. Currently the external is following the latest ISF commits.

src/isf/tools 

 This is an SVN external that follows the “eagle-i” Git branch from the following location: https://github.com/vivo-isf/tools/tree/eaglei/tools/owlcl

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