Page History

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Next, we will retrieve the new SHRINE webapp from the HMS Sonatype Nexus server at http://repo.open.med.harvard.edu/nexus/content/groups/public/net/shrine/shrine-war/. Choose the version that you are upgrading to (for example, 1.18.02) and navigate to that folder. From there, download the appropriate shrine-war-[VERSION].war file to the webapps directory on the SHRINE server and rename it to shrine.war.

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$ cd /opt/shrine/tomcat/webapps
$ wget http://repo.open.med.harvard.edu/nexus/content/groups/public/net/shrine/shrine-war/1.18.12/shrine-war-1.18.12.war -O shrine.war

Deploy New SHRINE Webclient

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$ cd /opt/shrine/tomcat/webapps
$ svn export https://open.med.harvard.edu/svn/shrine/releases/1.18.12/code/shrine-webclient/

After this, restore the previous i2b2_config_data.js and cell_config_data.js file from your backup and place it in the new shrine-webclient folder:

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To upgrade the SHRINE_QUERY table, retrieve the adapter-migrate-schema-to-1.18.sql script and run it:

$ wget https://open.med.harvard.edu/svn/shrine/releases/1.18.12/code/adapter/src/main/resources/adapter-migrate-schema-to-1.18.sql
$ mysql -u $SHRINE_MYSQL_USER -p$SHRINE_MYSQL_PASSWORD -D shrine_query_history < adapter-migrate-schema-to-1.18.sql

To create the HUB_QUERY and HUB_QUERY_RESULT tables, download the hub.sql script and run it:

$ wget https://open.med.harvard.edu/svn/shrine/releases/1.18.12/code/broadcaster-aggregator/src/main/resources/hub.sql
$ mysql -u $SHRINE_MYSQL_USER -p$SHRINE_MYSQL_PASSWORD -D shrine_query_history < hub.sql

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It may take a few seconds for the page to load, but after it does load, verify that the value for <shrineVersion> matches the version that was just deployed. If it is still displaying an old version, repeat steps 1-3 to redeploy the shrine.war file and start SHRINE again. Example output from this report for SHRINE 1.18.1 2 can be seen below:

<versionInfo>
  <shrineVersion>1.18.1<2</shrineVersion>
  <ontologyVersion>UNKNOWN</ontologyVersion>
  <adapterMappingsVersion>Unknown</adapterMappingsVersion>
  <scmRevision>(not available)</scmRevision>
  <scmBranch>UNKNOWN_BRANCH</scmBranch>
  <buildDate>2015-0203-1711 1709:5738:02<29</buildDate>
</versionInfo>