Warning |
---|
|
This section is intended for hub administrators only. For the ACT network, the hubs have already been set up and hosted at Harvard Catalyst, and remote sites should skip this section.
|
Here is a sample shrine.conf file for a system running SHRINE 4.0.0 , for a node supporting researchers and distributing queries.
...
It is rare but possible to have a set of patient data at the hub. Simply include the adapter section of qep-and-adapter-shrine.conf from Chapter 8 in your shrine.conf ., tailored to your system as explained earlier in this chapter.
Set the shrine i2b2 user password in the All passwords are now stored in password.conf file in /opt/shrine/tomcat/lib instead of shrine.conf .
Code Block |
---|
theme | RDark |
---|
title | password.conf |
---|
|
shrine.hiveCredentials.password = "changeit" |
...
Next, configure the initial network structures and queues for the hub.
Download the shrine network lifecycle tool into /opt/shrine:
Code Block |
---|
|
cd /opt/shrine
wget https://repo.open.catalyst.harvard.edu/nexus/content/groups/public/net/shrine/shrine-network-lifecycle-tool/4.0.0/shrine-network-lifecycle-tool-4.0.0-dist.zip -O shrine-network-lifecycle.zip unzip shrine-network-lifecycle.zip
cd shrine-network-lifecycle |
Inside the conf directory, edit the override.conf file to use your database username and password:
Code Block |
---|
|
shrine {
queryEntryPoint{
audit {
database {
dataSourceFrom = "testDataSource" //Can be JNDI or testDataSource . Use testDataSource for tests and command line tools, JNDI everywhere else
testDataSource {
driverClassName = "com.mysql.cj.jdbc.Driver" //JDBC driver class name
url = "jdbc:mysql://localhost:3306/qepAuditDB?serverTimezone=UTC" //URL to your database
credentials {
username = "yourUserName"
password = "yourDatabasePassword" |
Next, create a file named network.conf to meet your needs. At a minimum include the network section and a section for the hub's QEP:
Code Block |
---|
|
shrine {
network {
network {
name = "Network Name"
hubQueueName = "hub"
adminEmail = "yourEmail@yourhospital.edu"
momId = "HubQueue"
}
nodes = [
{
name = "Hub's QEP"
key = "hub-qep"
userDomainName = "network-hub"
queueName = "shrinehub"
sendQueries = "false"
adminEmail = "yourEmail@yourhospital.edu"
momId = "HubQepQueue"
}
]
}
} |
Finally use the shrineLifecycle tool to set up the network:
Code Block |
---|
|
./shrineLifecycle createNetwork network.conf |