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Here is a sample shrine.conf file for a system running SHRINE 3.1.0 , for a node supporting researchers and distributing queries. Note that the adapter section sets create = false; most real hubs do not have collections of patient data.
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shrine {
shrineHubBaseUrl = "https://localhost:6443" //The shrine hub's URL as observed from this tomcat server
i2b2BaseUrl = "http://i2b2.example.com:9090" //The local i2b2's URL as observed from this tomcat server
i2b2Domain = "exampleDomain"
i2b2ShrineProjectName = "SHRINE"
nodeKey = "somethingHub" //node key to get information from the hub about itself as a node.
//shrineDatabaseType = "mysql" // "mysql" by default. It can be "sqlserver" "mysql" or "oracle"
webclient {
domain = ${i2b2Domain}
name = ${i2b2ShrineProjectName}
siteAdminEmail = "shrine-admin@example.com"
}
hiveCredentials {
domain = ${i2b2Domain}
username = "demo"
crcProjectId = "Demo"
ontProjectId = ${i2b2ShrineProjectName}
}//hiveCredentials
hub {
create = true
client {
serverUrl = ${shrineHubBaseUrl}
}
//This part of the configuration is only used if no network is found in the hub's database
//If no network is foundIt is loaded into the database when the hub starts.
//To update the network or nodes, use the appropriate curl commands, not this config section.
//Specified nodes are added only if the node key does not already exist in the hub's database.
//todo put a reference to those commads as part of SHRINE-3032
ifNoNetwork {
network {
name = "Shrine Dev Test Network" //Name of your network
hubQueueName = "hub" //queue used to send messages to the hub, different from the queue used to send messages to a QEP and an adapter colocated with the hub
adminEmail = "yourname@example.com"
}
//Nodes in this network
//In ifNoNetwork - nodes are added only if the node key does not already exist in the hub's database.
nodes = [
{
name = "Shrine Dev1", //human-readable name for this node
key = "somethingHub", //machine-friendly key used to identify this node. Never change this.
userDomainName = "shrine-dev1.catalyst", //domain name for users from this node.
adminEmail = "yourname@example.shrine-dev1.com", //the email address for the admin of this node
queueName = "shrineDev1", //queue used to send messages to the qep and adapter at this node. This field is optional, defautls to the key if not specified
sendQueries = "false" //true to send queries to an adapter at this node. An optional field, true by default.
},
{
name = "shrine-dev2",
key = "shrineDev2",
userDomainName = "shrine-dev2.catalyst",
adminEmail = "yourname@example.shrine-dev2.com"
}
]
}//ifNoNetwork
networkHealth {
email {
networkName = "Enter network name"
networkSignature = "Enter network signature"
grantDescription = "Enter description of grant"
helpContactName = "Enter help contact name"
helpContactEmail = "yourname@example.com" //The email address for the node admin to contact for help if there are questions about an error that occurred after running the connectivity test
}
webpage {
networkName = "Enter network name"
webPageNote = "This is a note" //Optional alert message to display at the bottom of the network health webpage
alertMessage = "This is an alert message" //Optional alert message to display at the top of the network health webpage
}
connectivityTest {
queryId = "123456789" //The query Id of a previously run query that will be used to create a new query for the connectivity test
interval = "24 hours" //How often to run the connectivity test
timeLimit = "10 minutes" //How long to wait for the query to finish running. If the query does not finish by this time, it will be marked as an error.
delay = "5 seconds" //The initial delay for starting the connectivity test. If the delay is "5 seconds" then the connectivity test will run 5 seconds after server startup.
}
}//networkHealth
messagequeue {
blockingqWebApi {
enabled = true //run shrine's MoM system at the hub.
}
}
}//hub
adapter {
create = false
}//adapter
keystore {
file = "/opt/shrine/shrine.keystore"
privateKeyAlias = "shrine-hub"
keyStoreType = "JKS"
caCertAliases = ["shrine-ca"]
}//keystore
steward {
emailDataSteward {
//provide the email address of the shrine node system admin, to handle bounces and invalid addresses
from = "shrine-admin@example.com"
//provide the email address of the shrine node system admin, to handle bounces and invalid addresses
to = "shrine-steward@example.com"
//provide the externally-reachable URL for the data steward
externalStewardBaseUrl = ${shrineHubBaseUrl}/shrine-api/shrine-steward
}
}//steward
}//shrine
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