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Intended usages
Default configuration
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We recommend starting with the default properties and prebuilt train/test models. |
Default configuration
Developers can use Scrubber 3.X in "default mode" with the same settings as the provided train and test model files. Input and output settings are managed in scrubber.properties (file paths, database settings, method implementations).
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scrubber.properties : all supported config options and features in one place. |
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- Annotate word tokens and redact PHI from physician notes
- cTAKES lexical parsing and medical dictionary annotation
- WEKA multi-class decision tree classifier (plugin default)
- Protege UI support for human expert curators (reads output)
- Generate feature sets containing lexical properties, medical concept codes, and human defined rules
Models
- Prebuilt train and test models can be imported to Weka (default), Matlab, or R
- (default) Test your local physician notes without retraining
- (optional) Retrain model using local physician note samples, publications, and medical dictionaries.
Classification
- Distinguish (classify) private patient data from coded medical concepts and commonly used words words
Compare Text
- Compare lexical properties and distributions of public and private text sources
How To
Install / Train / Test / Scrub
Scrubber Property KEY = VALUEOffice Word name scrubber-3.x-runtime-guide.doc
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