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Introduction
This document c=
ontains the release notes for eagle-i Resource Ontology (ERO) version 1.10.=
2, released in conjunction with eagle-i application version 3.1.1.
Genome-corr= ected induced pluripotent stem cell line=E2=80=99 class is now =E2=80=98Gen= ome-modified induced pluripotent stem cell line=E2=80=99. Definition has be= en broadened to encompass any iPS cell line having a genome that has been m= odified from its native state.
=E2=80=98Re= lated NCBI Record=E2=80=99 field is now called =E2=80=99Related Dataset=E2= =80=99. Definition has been broadened to encompass datasets from any source= .
=E2=80=98In= duction by genomically integrated transformant=E2=80=99 technique is now = =E2=80=98Genomic integration/retroviral induction=E2=80=99.
=E2=80=98In= duction by episomal transformant=E2=80=99 technique is now =E2=80=98Episoma= l plasmid induction=E2=80=99.
=E2=80=98In= duction by labile transformant=E2=80=99 technique is now =E2=80=98Induction= by mRNA and inhibitory RNAs=E2=80=99.
=E2=80=98In= duction by chemical transformant=E2=80=99 technique is now =E2=80=98Chemica= l induction=E2=80=99.
=E2=80=98St= udy Type=E2=80=99 field is now =E2=80=98Type of QC Performed=E2=80=99.
Corrected t= ypo in =E2=80=98Fourier transform infrared spectrometer=E2=80=99.
Correct typ= o in =E2=80=98Impedance analyzer=E2=80=99.
Added =E2= =80=98Resource Collection=E2=80=99 class as a new secondary resource type. = Can only be added from within a primary resource record, via the =E2=80=98P= art of Collection=E2=80=99 field. Collections can consist of any number or = combination of resource types from the same or multiple owning organization= s.
Added the =E2=80=98ClinVar ID=E2=80=99 field to Genet= ic alteration records. Use to link specific alterations to the correspondin= g record in the NCBI ClinVar database.
Added the =E2=80=98Part of Collection=E2=80=99 field = to all primary resource types (reagents, instruments, biological specimens,= research opportunities, databases, software, documents, human studies, org= anisms, and services) to connect to the corresponding Resource Collection r= ecord.
Added inverse =E2=80=98Included Resource=E2=80=99 (ha= s_collection_member) field to link Resource Collection records to related r= esources in search display panels. Note that this field is hidden in the SW= EET and only visible in the ontology browser.
Added inverse =E2=80=98Derived Biological Material=E2= =80=99 (derived_into_biological_material) field to link Human Subjects to r= elated biospecimens, primary cell lines, and stem cell lines in search disp= lay panels. Note that this field is hidden in the SWEET and only visible in= the ontology browser.
Removed data model exclude from inverse =E2=80=98Fami= ly Member=E2=80=99 (has_family_member) field to link Family records to huma= n subjects in search display panels. Note that this field is hidden in the = SWEET and only visible in the ontology browser.
Removed the =E2=80=98Inventory System Format=E2=80=98= field from laboratory records.
The production_funded_by (ERO_0002096) property has b= een merged and replaced by =E2=80=98funded_by (ERO_0000597). Change should = be largely invisible to users, as both properties displayed with the same = =E2=80=98Funded by=E2=80=99 field name. Requires data migration.
=Optical tweezers
Body fat meter
Plethysmograph
Bone densitometer
Text mining technique
Sendai virus induction
TMT quantitation
SILAC labeling
Mass spectrometry labeling
Isobaric labeling
Luciferase assay
Data security technique
Functional Magnetic Resonance Imaging
Recombinase-mediated cassette exchange
body composition measurement
bioelectrical impedance analysis
air displacement plethysmography
meal preparation
Male Urogenital Diseases
Genital Diseases, Male
Prostatic Diseases
Prostatic Hyperplasia
Testicular diseases
Proteinuria
Angina Pectoris
Anxiety Disorders
Child Development Disorders, Pervasive
Autistic Disorder
Bipolar Disorder
Mood Disorders
Heroin Dependence
Obsessive-Compulsive Disorder
Panic Disorder
Seizures
Deafness
Eating Disorders
Diplopia
Dyslexia
Gastrointestinal Hemorrhage
Gastroparesis
Heart Block
Intervertebral Disc Displacement
Hyperinsulinism
Kidney Calculi
Tachycardia
Delirium, Dementia, Amnestic, Cognitive Disorders
Amnesia
Amnesia, Transient Global
Neuralgia, Postherpetic
Sleep Apnea Syndromes
Sleep Disorders
Vertigo
Purpura, Thrombocytopenic
Purpura, Thrombocytopenic, Idiopathic
Deaf-Blind Disorders
Vision Disorders
Blindness
Wolfram Syndrome
Hearing Disorders
Hearing Loss
Trimethylaminuria
Depressive disorder
Cysts
Ovarian Cysts
Polycystic Ovary Syndrome
Prader-Willi Syndrome
Neurobehavioral Manifestations
Intellectual Disability
Mental Retardation, X-Linked
Rubinstein-Taybi Syndrome
Cri-du-Chat Syndrome
De Lange Syndrome
Neisseria meningitidis
Natronomonas
Nematostella vectensis
S language
Excel programming language
Failure time data
Reference genome data
Random forest algorithm
Alignment format
BAM
VCF