 marc-danie | 07adef01f58 | adding | | |
marc-danie | 90d17760294 | adding | | |
marc-danie | 2737da2f934 | adding | | |
 Xavier Haurie | 54bf655f9f3 | code clean-up / refactoring | | |
Xavier Haurie | 4728aa1b13e | code clean-up / refactoring | | |
Xavier Haurie | 275f020dbbb | use left joins instead of inner joins for gender, country, etc. because the columns in the database allow null;
fix m... | | |
Xavier Haurie | e5f83e64361 | use left joins instead of inner joins for gender, country, etc. because the columns in the database allow null;
fix m... | | |
Xavier Haurie | e57dd233620 | bugs: setting last name in output to first name of input data | | |
Xavier Haurie | a28d85938ee | bugs: setting last name in output to first name of input data | | |
Xavier Haurie | 386d6902980 | bugs: using country id instead of country name; setting last name in output to first name of input data | | |
Xavier Haurie | 53e8e1aeec7 | bugs: using country id instead of country name; setting last name in output to first name of input data | | |
Xavier Haurie | dea711a0aeb | clean up sample properties file | | |
Xavier Haurie | 726c0255854 | clean up sample properties file | | |
Xavier Haurie | 7a4c70d2bda | work on usability aspects, error handling, logging, README file, etc. | | |
Xavier Haurie | 7bba933e990 | work on usability aspects, error handling, logging, README file, etc. | | |
Xavier Haurie | 4f9b2f992c0 | Added -help option
Made decrypt true by default
Added comments and program args to shell script | | |
Xavier Haurie | e7be63f028f | Added -help option
Made decrypt true by default
Added comments and program args to shell script | | |
Xavier Haurie | 80a531163c3 | fix subject comparator for sorting.
fix output for missing and invalid MRNs. | | |
Xavier Haurie | 2ad3d6373f5 | fix subject comparator for sorting.
fix output for missing and invalid MRNs. | | |
Xavier Haurie | d2eeaadb111 | fix typo | | |
Xavier Haurie | 54c3c32b728 | fix typo | | |
Xavier Haurie | 2aa77bb3f2e | replaced left joins on gender with inner joins
added sorting to list of non-clustered subjects needing curation | | |
Xavier Haurie | 348cf0e06d7 | replaced left joins on gender with inner joins
added sorting to list of non-clustered subjects needing curation | | |
Xavier Haurie | 0e67506ea97 | refactored prepared statements so they don't get re-created whenever a new query is run. | | |
Xavier Haurie | 25d229725d2 | refactored prepared statements so they don't get re-created whenever a new query is run. | | |
Xavier Haurie | 104ceaab0bd | debugged option to make test-mode run faster again | | |
Xavier Haurie | 46228dd81d3 | debugged option to make test-mode run faster again | | |
Xavier Haurie | a056c669890 | add an option to make test-mode run faster again | | |
Xavier Haurie | 61a76fdec8a | add an option to make test-mode run faster again | | |
Xavier Haurie | 500df7a98a5 | debug and add missing (minor) features -- this version seems very slow! | | |
Xavier Haurie | 26171adc01b | debug and add missing (minor) features -- this version seems very slow! | | |
marc-danie | 3787d57c32e | fixed the active navigation menu item | | |
marc-danie | 8762b94ee0b | fixed the active navigation menu item | | |
Xavier Haurie | d20a3d16f0b | debug and add missing (minor) features | | |
Xavier Haurie | 8b3724c5b31 | debug and add missing (minor) features | | |
Xavier Haurie | f6c42215bb8 | implemented according to new specification. | | |
Xavier Haurie | 9b8b18c14b3 | implemented according to new specification. | | |
 Carl | 4485b2a4dfd | Rendering (arbitrarily chosen) different colors for appointment summaries with Subject NA. Color changes back and for... | | |
Carl | 417ac6aef35 | Rendering (arbitrarily chosen) different colors for appointment summaries with Subject NA. Color changes back and for... | | |
Xavier Haurie | 75ba44be118 | converting to new spec. Not tested yet. | | |
Xavier Haurie | f9482d88c44 | converting to new spec. Not tested yet. | | |
Xavier Haurie | d4c49d342eb | output 2 curation lists to 2 distinct CSV files. | | |
Xavier Haurie | 9f7a045989a | output 2 curation lists to 2 distinct CSV files. | | |
Xavier Haurie | 10211a22c07 | Fine-tune program output -- what goes to stdout, stderr, and/or log4j. | | |
Xavier Haurie | c9f04ac6dc1 | Fine-tune program output -- what goes to stdout, stderr, and/or log4j. | | |
Carl | 838aafc8862 | Render switch-subjects appt-summaries on home and appts calendars | | |
Carl | 796d74e2375 | Render switch-subjects appt-summaries on home and appts calendars | | |
Xavier Haurie | 7a4606b2d48 | odds and ends | | |
Xavier Haurie | fb100556dc7 | odds and ends | | |
marc-danie | 462b308b6ea | added item to the navigation menu that links to the new Subject search form | | |
marc-danie | 13b20260b21 | added item to the navigation menu that links to the new Subject search form | | |
marc-danie | 756e4b07e00 | updated subject search beta form | | |
marc-danie | aa4806dc34a | updated subject search beta form | | |
Xavier Haurie | 2917fed10b8 | vast improvements to CLI (more options, more error checking, more error feedback)
Plugged in POI but have't really st... | | |
Xavier Haurie | 1a6f18e7c9c | vast improvements to CLI (more options, more error checking, more error feedback)
Plugged in POI but have't really st... | | |
Xavier Haurie | 3be1853dd42 | removed apache commons cli from where it was not used
feedback from code review on SubjectDataCleaner. Simple changes... | | |
Xavier Haurie | 59ab8feeae1 | removed apache commons cli from where it was not used
feedback from code review on SubjectDataCleaner. Simple changes... | | |
marc-danie | a631ed8b931 | adding | | |
marc-danie | f356b41c4b7 | adding | | |
Carl | ae1e3533de7 | back-end for switch-subjects button / div.
add switch-subjects to home-screen. | | |
Carl | 74c819e28c0 | back-end for switch-subjects button / div.
add switch-subjects to home-screen. | | |
Xavier Haurie | b0cf4393b9e | fixed some documentation | | |
Xavier Haurie | 5d98e7e51ae | fixed some documentation | | |
Xavier Haurie | a0f50f6961a | debugged data cleaner. | | |
Xavier Haurie | 68722a4832f | debugged data cleaner. | | |
 Ankit Panchamia | 6c0dd3dc25b | Merge remote-tracking branch 'origin/blockVisit' into develop | | |
Ankit Panchamia | 625f4a960db | Merge remote-tracking branch 'origin/blockVisit' into develop | | |
Xavier Haurie | 60d1e4752b3 | Lots of comments / documentation
First cut implementing the output to CSV of subjects with no matches but needing cu... | | |
Xavier Haurie | fba8334eb74 | Lots of comments / documentation
First cut implementing the output to CSV of subjects with no matches but needing cu... | | |
Xavier Haurie | 95fb6e896cc | modified matching rules as per my interpretation of https://open.med.harvard.edu/wiki/display/HCCRCSCHED/2016-04-22+M... | | |
Xavier Haurie | b2c6d2f5cc7 | modified matching rules as per my interpretation of https://open.med.harvard.edu/wiki/display/HCCRCSCHED/2016-04-22+M... | | |
Xavier Haurie | 33a06b5cbb4 | copied mgh dump data from scheduler-internal to scheduler project | | |
Xavier Haurie | f1ed14779ea | copied mgh dump data from scheduler-internal to scheduler project | | |
Xavier Haurie | 6b19449ee4b | fix fake subjects program to reset auto incremented subject id before inserting fake subjects | | |
Xavier Haurie | fbffd133492 | fix fake subjects program to reset auto incremented subject id before inserting fake subjects | | |
Carl | f84009fba83 | another checkpoint on the way to 'change the subject' wizard/div
-- new subject id and visit id make it to the resour... | | |
Carl | 8cf5afb2a37 | another checkpoint on the way to 'change the subject' wizard/div
-- new subject id and visit id make it to the resour... | | |
Xavier Haurie | 39141b0567e | minor tweak on sample data | | |
Xavier Haurie | 92cae0e3a42 | minor tweak on sample data | | |
Xavier Haurie | e0159db7036 | work in progress : integrate lists of stale study assignments into curation custers | | |
Xavier Haurie | dcbc39d7e29 | work in progress : integrate lists of stale study assignments into curation custers | | |
Xavier Haurie | 9cf52a6e1f0 | work in progress : integrate lists of stale study assignments into curation custers | | |
Xavier Haurie | 7feb4601b39 | work in progress : integrate lists of stale study assignments into curation custers | | |
Xavier Haurie | 6742ca4cdb3 | work in progress : integrate lists of stale subjects and assignment to studies into curation custers | | |
Xavier Haurie | aaa7687b4b9 | work in progress : integrate lists of stale subjects and assignment to studies into curation custers | | |
Carl | 096e5ca1bdf | checkpoint on the way to 'change the subject' wizard/div | | |
Carl | 0a3871ddc1d | checkpoint on the way to 'change the subject' wizard/div | | |
Xavier Haurie | ddf320c738c | added a little bit of profiling | | |
Xavier Haurie | f89fb3d76a4 | added a little bit of profiling | | |
Xavier Haurie | ea24dd58c9f | Input data was wrong, and clusters were missing the very first entry systematically. Program now outputs expected CSV... | | |
Xavier Haurie | eec00e71798 | Input data was wrong, and clusters were missing the very first entry systematically. Program now outputs expected CSV... | | |
Xavier Haurie | 6a935c08582 | outputs CSV. Seems to output wrong data though. | | |
Xavier Haurie | 90c90d54a81 | outputs CSV. Seems to output wrong data though. | | |
Xavier Haurie | 3f38de423a6 | Merge branch 'epic-integration-data-cleanup' into develop
* epic-integration-data-cleanup:
minor progress on makin... | | |
Xavier Haurie | 0bd7e5f821f | Merge branch 'epic-integration-data-cleanup' into develop
* epic-integration-data-cleanup:
minor progress on makin... | | |
Xavier Haurie | 2ce1e1f10d9 | data clean-up starting to work. Based on the sample data in sample-data-big-cluster.sql, it generates a cluster of 6 ... | | |
Xavier Haurie | 82059369bc8 | data clean-up starting to work. Based on the sample data in sample-data-big-cluster.sql, it generates a cluster of 6 ... | | |
Xavier Haurie | 5ac3f9fd32e | re-wrote if statement into ? : ternary statement | | |
Xavier Haurie | 8a523cb32cd | re-wrote if statement into ? : ternary statement | | |
Carl | f2f713ba1bf | Initial pass at block-visit | | |
Carl | 43627018c3f | Initial pass at block-visit | | |
Xavier Haurie | 778248d5369 | Merge branch 'develop' into epic-integration-data-cleanup
* develop:
ignore additional log files
added option to... | | |
Xavier Haurie | aa54275c98c | Merge branch 'develop' into epic-integration-data-cleanup
* develop:
ignore additional log files
added option to... | | |
Xavier Haurie | 260ed7e0ac9 | ignore additional log files | | |
Xavier Haurie | 01237c3ab2b | ignore additional log files | | |
Xavier Haurie | 4df620a90b4 | added option to randomize MRNs; by default MRN's are not randomized.
Randomizing here means just inserting random sp... | | |
Xavier Haurie | 8018965417d | added option to randomize MRNs; by default MRN's are not randomized.
Randomizing here means just inserting random sp... | | |
Xavier Haurie | fe4ef1010c3 | Added a cheat-sheet to document how to use the Vagrant scheduler box, in detail. All the setup and basic lifecylce op... | | |
Xavier Haurie | 99049f557e7 | Added a cheat-sheet to document how to use the Vagrant scheduler box, in detail. All the setup and basic lifecylce op... | | |
Xavier Haurie | 1c93bb7918f | Merge branch 'develop' into epic-integration-data-cleanup
* develop: (37 commits)
WIP!! I just don't like to have ... | | |
Xavier Haurie | 04ae9aa775f | Merge branch 'develop' into epic-integration-data-cleanup
* develop: (37 commits)
WIP!! I just don't like to have ... | | |
Xavier Haurie | a6800b7a1d5 | Merge branch 'develop' of https://open.med.harvard.edu/stash/scm/hccrcscheduler/scheduler into develop
* 'develop' o... | | |
Xavier Haurie | b4e104be263 | Merge branch 'develop' of https://open.med.harvard.edu/stash/scm/hccrcscheduler/scheduler into develop
* 'develop' o... | | |
Xavier Haurie | 3326e0892be | WIP!! I just don't like to have lots of code uncommitted before I go home. | | |
Xavier Haurie | 195dcd920fb | WIP!! I just don't like to have lots of code uncommitted before I go home. | | |
Ankit Panchamia | b9483877cb8 | Add subject to study functionality and restriction on subject phone fields. | | |
Ankit Panchamia | b5b5acd9a04 | Add subject to study functionality and restriction on subject phone fields. | | |
Ankit Panchamia | cfb8a5278fc | refresh subject data on edit... | | |
Ankit Panchamia | 85b19ac1872 | refresh subject data on edit... | | |
Carl | b69f700f9ee | Add some unit-tests for SubjectServiceClassic | | |
Carl | 11dbe024822 | Add some unit-tests for SubjectServiceClassic | | |
Ankit Panchamia | b715ff5bf81 | implemented subject edit functionality and cleaned up global/local variables | | |
Ankit Panchamia | 04b124517d7 | implemented subject edit functionality and cleaned up global/local variables | | |
Carl | bd8dadf7de3 | Add some unit-tests | | |
Carl | f07ee73ec4a | Add some unit-tests | | |
Carl | c9010cd39d1 | Add placement suggestion in example context.xml | | |
Carl | e40c9dca783 | Add placement suggestion in example context.xml | | |
Ankit Panchamia | 0958783927f | remove unused method. | | |
Ankit Panchamia | cd519d7a358 | remove unused method. | | |
Carl | b7d3d9c5c7a | move empi-dev.sql to other project.
add header-commercials to config files | | |
Carl | 82833b75ff5 | move empi-dev.sql to other project.
add header-commercials to config files | | |
Xavier Haurie | d8e00036145 | try to get csv writer to work. Added comments to config xml file about which encryption key is beling used | | |
Xavier Haurie | 952f7fd7b9d | try to get csv writer to work. Added comments to config xml file about which encryption key is beling used | | |
Xavier Haurie | 73809e5a0a7 | add opencsv dependency | | |
Xavier Haurie | 3b817bd5e03 | add opencsv dependency | | |
Ankit Panchamia | 398453dd812 | license headers for the log files. | | |
Ankit Panchamia | ee0bff44ae8 | license headers for the log files. | | |
Xavier Haurie | 5f6cd4760e3 | add output files generated by data cleaner to .gitignore | | |
Xavier Haurie | 12398d2bac6 | add output files generated by data cleaner to .gitignore | | |
Xavier Haurie | c8cc396d703 | Merge branch 'develop' of https://open.med.harvard.edu/stash/scm/hccrcscheduler/scheduler into develop
* 'develop' o... | | |
Xavier Haurie | e065e80fb28 | Merge branch 'develop' of https://open.med.harvard.edu/stash/scm/hccrcscheduler/scheduler into develop
* 'develop' o... | | |
Xavier Haurie | b9b920743dd | updated all log4j properties to append not overwrite existing log files; added stale subject identification; some cod... | | |
Xavier Haurie | 559aebc0035 | updated all log4j properties to append not overwrite existing log files; added stale subject identification; some cod... | | |
Ankit Panchamia | 7351ee725cb | create new subject functionality fixed.. | | |
Ankit Panchamia | bc2e889c583 | create new subject functionality fixed.. | | |
Carl | 24610f39fe7 | Adjust magic for the build-number maven plugin to work | | |
Carl | 22ad79e2d56 | Adjust magic for the build-number maven plugin to work | | |
Xavier Haurie | 698c30fc33f | added log4j properties that seemed to be missing | | |
Xavier Haurie | 36253b83e50 | added log4j properties that seemed to be missing | | |
Xavier Haurie | f2dabf74186 | added all kinds of logging mechanism. Not included: creating a db table with the results. | | |
Xavier Haurie | f8a0d6e8d53 | added all kinds of logging mechanism. Not included: creating a db table with the results. | | |
Xavier Haurie | 597d05f489e | SubjectDataCleaner generates a SQL file containing SQL update statements for all the MRN's that need to be normalized. | | |
Xavier Haurie | 5ab2648009a | SubjectDataCleaner generates a SQL file containing SQL update statements for all the MRN's that need to be normalized. | | |
Xavier Haurie | ee281d0f1e4 | FakeSubject generates fake Mrns with randome dashes and spaces. SubjectDataCleaner normalizes MRNs and outputs them o... | | |
Xavier Haurie | b63eadd35b5 | FakeSubject generates fake Mrns with randome dashes and spaces. SubjectDataCleaner normalizes MRNs and outputs them o... | | |
Xavier Haurie | 173e7e2bdab | decrypts the subject | | |
Xavier Haurie | da8c4a95e89 | decrypts the subject | | |
Xavier Haurie | 1023ac11345 | subject data cleaner runs without bombing out. But it doesn't do more than listing the MRNs found in the DB. | | |
Xavier Haurie | 28ec0d0e309 | subject data cleaner runs without bombing out. But it doesn't do more than listing the MRNs found in the DB. | | |
Carl | 3e2cf908513 | Tweak data-reorganization per convo with Ankit | | |
Carl | 27174b0860e | Tweak data-reorganization per convo with Ankit | | |
Carl | 6d462c03259 | Reorganize properties. Everything should now be external (with stubs in the example properties file), except the data... | | |
Carl | aac49cff679 | Reorganize properties. Everything should now be external (with stubs in the example properties file), except the data... | | |
Carl | cc0112c9db1 | New safe (test = "y") Patient data for unit tests | | |
Carl | 2d792a0225e | New safe (test = "y") Patient data for unit tests | | |
Carl | 838006ef1f3 | handle blank date for search subject | | |
Carl | 631a2113258 | handle blank date for search subject | | |
Carl | 87bf8a4015f | remove warning from open-source sql | | |
Carl | 8a16142edbb | remove warning from open-source sql | | |
Ankit Panchamia | 91772d7839a | implemented service calls for subject standalone mode.
Refactoring work done in the js/HTML file. | | |
Ankit Panchamia | 18c17ce07dd | implemented service calls for subject standalone mode.
Refactoring work done in the js/HTML file. | | |
Xavier Haurie | e351522f512 | minor comment clean-up | | |
Xavier Haurie | 33277ce4b42 | minor comment clean-up | | |
Xavier Haurie | 46150d778c2 | add note about de-dpulicating properties between scheduler.properties file(s) and scheduler.xml | | |
Xavier Haurie | f4a320c2245 | add note about de-dpulicating properties between scheduler.properties file(s) and scheduler.xml | | |
Xavier Haurie | c6d6205c21c | Merge branch 'develop' of https://open.med.harvard.edu/stash/scm/hccrcscheduler/scheduler into develop
* 'develop' o... | | |
Xavier Haurie | 75d69ef8ca9 | Merge branch 'develop' of https://open.med.harvard.edu/stash/scm/hccrcscheduler/scheduler into develop
* 'develop' o... | | |
Xavier Haurie | dd31e48b4e7 | Properties file refactor with Carl, David H, Ankit and Xav | | |
Xavier Haurie | 9b8e003c098 | Properties file refactor with Carl, David H, Ankit and Xav | | |
Ankit Panchamia | a6b7cb9a2b6 | implemented service calls for subject standalone mode.
Refactoring work done in the js/HTML file. | | |
Ankit Panchamia | e97fd3a1e4d | implemented service calls for subject standalone mode.
Refactoring work done in the js/HTML file. | | |
Carl | 40a833b575d | this resources file replaced by corresponding scheduler-external.properties, in tomcat.../lib | | |
Carl | d8e374919fa | this resources file replaced by corresponding scheduler-external.properties, in tomcat.../lib | | |
Carl | 2490cd366f8 | tweaking for property externalization.
ssl wiring | | |
Carl | 5f5a413f540 | tweaking for property externalization.
ssl wiring | | |
Ankit Panchamia | 7d4a45f742d | removed following HTML files: searchgrid_subject.html, study_subject.html, studySubject_grid.html (this files contai... | | |
Ankit Panchamia | b60264f6751 | removed following HTML files: searchgrid_subject.html, study_subject.html, studySubject_grid.html (this files contai... | | |
Xavier Haurie | 73d6f22c1b1 | Merge pull request #1 in HCCRCSCHEDULER/scheduler from cleanup-properties-files-and-executables-names to develop
Car... | | |
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